BLASTX nr result

ID: Panax21_contig00028248 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00028248
         (684 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282524.1| PREDICTED: uncharacterized RNA-binding prote...   196   5e-48
ref|XP_002324286.1| predicted protein [Populus trichocarpa] gi|2...   190   2e-46
ref|XP_002308653.1| predicted protein [Populus trichocarpa] gi|1...   186   4e-45
ref|XP_004152212.1| PREDICTED: uncharacterized RNA-binding prote...   185   8e-45
gb|AAZ94630.1| zinc finger protein-like protein [Gossypium hirsu...   184   1e-44

>ref|XP_002282524.1| PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Vitis
           vinifera] gi|296082008|emb|CBI21013.3| unnamed protein
           product [Vitis vinifera]
          Length = 158

 Score =  196 bits (497), Expect = 5e-48
 Identities = 93/161 (57%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
 Frame = +2

Query: 83  MSRPGDWNCRSCQHLNFQRRDSCQRCGEPRHXXXXXXXXXXXXXXXXXXXXXXXXXPDVR 262
           MSRPGDWNCRSCQ+LNFQRRDSCQRCGEPR                          PDVR
Sbjct: 1   MSRPGDWNCRSCQYLNFQRRDSCQRCGEPR-----PGDRGDYGGFSRGSSSFGFTGPDVR 55

Query: 263 PGDWYCNIGNCGAHNFASRSSCFKCGAFKDE-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 439
           PGDWYC IGNCGAHNFASRSSCFKCG  KDE                             
Sbjct: 56  PGDWYCTIGNCGAHNFASRSSCFKCGGLKDESSGGYEGDMSRPRGFGFGSGGSSGSGIGR 115

Query: 440 XXWKSGDWICSRTGCNEHNFASRMECFRCNAPREPGSRSTY 562
             WKSGDWIC+R+GCNEHNFASRMECFRCNAPR+ G++S+Y
Sbjct: 116 SGWKSGDWICNRSGCNEHNFASRMECFRCNAPRDSGNKSSY 156


>ref|XP_002324286.1| predicted protein [Populus trichocarpa] gi|222865720|gb|EEF02851.1|
           predicted protein [Populus trichocarpa]
          Length = 155

 Score =  190 bits (483), Expect = 2e-46
 Identities = 92/161 (57%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
 Frame = +2

Query: 83  MSRPGDWNCRSCQHLNFQRRDSCQRCGEPRHXXXXXXXXXXXXXXXXXXXXXXXXXPDVR 262
           MSRPGDWNCRSCQHLNFQRRDSCQRCG+PR                          PDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDPR----PGERDHYGSFGGRSGGSFGFTGPDVR 56

Query: 263 PGDWYCNIGNCGAHNFASRSSCFKCGAFKDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 442
           PGDWYC++GNCGAHNFASRSSCFKCG  KDE                             
Sbjct: 57  PGDWYCSVGNCGAHNFASRSSCFKCGMSKDE--SSGGGLDADISWMRGYGFGGGSASSRS 114

Query: 443 XWKSGDWICSRTGCNEHNFASRMECFRCNAPREPGS-RSTY 562
            WKSGDWIC+R+GCNEHNFASR EC+RCNAPRE GS +S+Y
Sbjct: 115 NWKSGDWICTRSGCNEHNFASRTECYRCNAPRESGSNKSSY 155


>ref|XP_002308653.1| predicted protein [Populus trichocarpa] gi|118482028|gb|ABK92945.1|
           unknown [Populus trichocarpa]
           gi|222854629|gb|EEE92176.1| predicted protein [Populus
           trichocarpa]
          Length = 159

 Score =  186 bits (472), Expect = 4e-45
 Identities = 91/162 (56%), Positives = 97/162 (59%), Gaps = 2/162 (1%)
 Frame = +2

Query: 83  MSRPGDWNCRSCQHLNFQRRDSCQRCGEPRHXXXXXXXXXXXXXXXXXXXXXXXXXPDVR 262
           MSRPGDWNCRSCQHLNFQRRDSCQRCG+PR                          PDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDPR---PGERDHYGSFGGRSSGGSFGFTGPDVR 57

Query: 263 PGDWYCNIGNCGAHNFASRSSCFKCGAFKDE-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 439
           PGDWYC  GNCGAHNFASRSSCFKCG  KDE                             
Sbjct: 58  PGDWYCTAGNCGAHNFASRSSCFKCGVSKDESSGGGLDADMSRMRGYGFGGGGGGGSGSS 117

Query: 440 XXWKSGDWICSRTGCNEHNFASRMECFRCNAPREPGS-RSTY 562
             WKSGDWIC+R+GCNEHNFASR EC+RCNAPRE  S +S+Y
Sbjct: 118 RNWKSGDWICTRSGCNEHNFASRTECYRCNAPRESSSNKSSY 159


>ref|XP_004152212.1| PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like
           [Cucumis sativus] gi|449530863|ref|XP_004172411.1|
           PREDICTED: uncharacterized RNA-binding protein
           C17H9.04c-like [Cucumis sativus]
          Length = 146

 Score =  185 bits (469), Expect = 8e-45
 Identities = 87/154 (56%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
 Frame = +2

Query: 83  MSRPGDWNCRSCQHLNFQRRDSCQRCGEPRHXXXXXXXXXXXXXXXXXXXXXXXXXPDVR 262
           MSRPGDWNCRSCQHLNFQRRD CQRCGEP+                           DVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGIGRGGSGFGYGGS----------DVR 50

Query: 263 PGDWYCNIGNCGAHNFASRSSCFKCGAFKDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 442
           PGDWYC++GNCGAHNFASRSSCFKCGAFKD+                             
Sbjct: 51  PGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAA 110

Query: 443 X-WKSGDWICSRTGCNEHNFASRMECFRCNAPRE 541
             WKSGDWIC+R+GCNEHNFASRMECFRC+APR+
Sbjct: 111 SAWKSGDWICARSGCNEHNFASRMECFRCSAPRD 144


>gb|AAZ94630.1| zinc finger protein-like protein [Gossypium hirsutum]
          Length = 139

 Score =  184 bits (468), Expect = 1e-44
 Identities = 88/160 (55%), Positives = 96/160 (60%)
 Frame = +2

Query: 83  MSRPGDWNCRSCQHLNFQRRDSCQRCGEPRHXXXXXXXXXXXXXXXXXXXXXXXXXPDVR 262
           MSRPGDWNCRSCQHLNFQRRD+CQRCGE R+                          DVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDNCQRCGESRYGVRVGSTFGFTAGS------------DVR 48

Query: 263 PGDWYCNIGNCGAHNFASRSSCFKCGAFKDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 442
           PGDWYC  GNCG HNFASRS+CF CGAFKDE                             
Sbjct: 49  PGDWYCTAGNCGTHNFASRSTCFNCGAFKDE---------SAGGFDLDMSRSRGFGGNRS 99

Query: 443 XWKSGDWICSRTGCNEHNFASRMECFRCNAPREPGSRSTY 562
            WKSGDWIC+R GCNEHNFASRMECFRC+APRE  +R++Y
Sbjct: 100 GWKSGDWICTRLGCNEHNFASRMECFRCSAPREFNNRTSY 139


Top