BLASTX nr result

ID: Panax21_contig00028244 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00028244
         (572 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275598.1| PREDICTED: E3 ubiquitin protein ligase DRIP2...   184   7e-45
ref|XP_002520991.1| ring finger protein, putative [Ricinus commu...   152   5e-35
ref|XP_002306821.1| predicted protein [Populus trichocarpa] gi|2...   145   4e-33
emb|CBI35207.3| unnamed protein product [Vitis vinifera]              134   8e-30
ref|XP_003520583.1| PREDICTED: E3 ubiquitin protein ligase DRIP2...   134   1e-29

>ref|XP_002275598.1| PREDICTED: E3 ubiquitin protein ligase DRIP2 [Vitis vinifera]
           gi|297735508|emb|CBI17948.3| unnamed protein product
           [Vitis vinifera]
          Length = 430

 Score =  184 bits (468), Expect = 7e-45
 Identities = 112/195 (57%), Positives = 128/195 (65%), Gaps = 6/195 (3%)
 Frame = -2

Query: 571 LRGSSFSVEKQIKKXXXXXXXXXXXXSR-ETLTKLTQNIRQNSSVGEPSSLPRPDKETEN 395
           LRGS FS+EK IKK            S  ETL K TQNIRQNS   EPS    P+KETEN
Sbjct: 143 LRGSGFSIEKLIKKEEDSVGERPASSSSPETLNKFTQNIRQNSPSAEPSIHSTPNKETEN 202

Query: 394 GADKWEGEGKVDLWKPLNFLVEVANRSKSSKFTSQGSTSKPEPIDEPKIEGLSRKTK--- 224
           GA+ WEG  K DLWKPLN LVEVANR+KS KF SQGS  K EP+  P  E   RKTK   
Sbjct: 203 GAESWEG--KFDLWKPLNCLVEVANRTKSLKFNSQGSAVKSEPMHVPDGESQVRKTKVKE 260

Query: 223 --QKSKVQNEKGSSDMGPLESVKPKKSRRIHQKKAATFGESGVSPQAVLDATRVRCERKF 50
             +KSKVQ+EK S+     ESVKPKK  R+ +++AA FGE G+SPQAVL+A     +R+ 
Sbjct: 261 HGRKSKVQDEKISTTPVSAESVKPKKLCRVRRRRAAAFGELGISPQAVLNAVN-NHKRRT 319

Query: 49  NPIWCSLVASEDQEG 5
             IW SLVASEDQEG
Sbjct: 320 GSIWFSLVASEDQEG 334


>ref|XP_002520991.1| ring finger protein, putative [Ricinus communis]
           gi|223539828|gb|EEF41408.1| ring finger protein,
           putative [Ricinus communis]
          Length = 520

 Score =  152 bits (383), Expect = 5e-35
 Identities = 97/193 (50%), Positives = 124/193 (64%), Gaps = 4/193 (2%)
 Frame = -2

Query: 571 LRGSSFSVEKQIKKXXXXXXXXXXXXSR-ETLTKLTQNIRQNSSVGEPSSLPRPDKETEN 395
           LR S+F +EK+IKK            S  ET+ K  QN +QNSS  E +SL  P+ E EN
Sbjct: 143 LRISNFPIEKRIKKEDDPAEDHLENSSSPETVNKFNQNTKQNSSSAE-ASLFAPNNEAEN 201

Query: 394 GADKWEGEGKVDLWKPLNFLVEVANRSKSSKFTSQGSTSKPEPIDEPKIEGLSRKTK--- 224
           GA+ W+G  K DLW+PLN LVEVANRSKS K + Q S +K E     + E   RKTK   
Sbjct: 202 GAESWDG--KSDLWQPLNCLVEVANRSKSFK-SIQVSDAKQEATQGHENEPQVRKTKFKE 258

Query: 223 QKSKVQNEKGSSDMGPLESVKPKKSRRIHQKKAATFGESGVSPQAVLDATRVRCERKFNP 44
           +K KV++EK + D  P ++  PK+ RRI +KKAA FG+SG+S QAVL+A  V  E++  P
Sbjct: 259 EKLKVEDEKNNIDT-PSDAAGPKRLRRIRRKKAANFGDSGISSQAVLNAASVNHEKRAGP 317

Query: 43  IWCSLVASEDQEG 5
           +W SLVASEDQEG
Sbjct: 318 VWFSLVASEDQEG 330


>ref|XP_002306821.1| predicted protein [Populus trichocarpa] gi|222856270|gb|EEE93817.1|
           predicted protein [Populus trichocarpa]
          Length = 436

 Score =  145 bits (367), Expect = 4e-33
 Identities = 94/195 (48%), Positives = 120/195 (61%), Gaps = 6/195 (3%)
 Frame = -2

Query: 571 LRGSSFSVEKQIKKXXXXXXXXXXXXSR-ETLTKLTQNIRQNSSVGEPSSLPRPDKETEN 395
           LRGS FS+EK IKK            S  ET  K  QN RQNSS  EPS  P PD E EN
Sbjct: 149 LRGSGFSIEKPIKKEHDRAEDSPESSSSPETPKKFNQNTRQNSSSAEPSQ-PAPDDEAEN 207

Query: 394 GADKWEGEGKVDLWKPLNFLVEVANRSKSSKFTSQGSTSKPE--PI--DEPKIEGLS-RK 230
           GA+    +GK DLW+PLNFLVEVANR+KS K   Q + +K E  P+  +EP++     ++
Sbjct: 208 GAEP--RDGKSDLWQPLNFLVEVANRTKSFKSIPQVNDAKLESRPVRENEPQVHKTKFKE 265

Query: 229 TKQKSKVQNEKGSSDMGPLESVKPKKSRRIHQKKAATFGESGVSPQAVLDATRVRCERKF 50
            K KSKV++EK + D     +V+PK+ RRI +KKAA    SG+S  AVL     + ER+ 
Sbjct: 266 NKDKSKVKDEKNNIDNVSEGTVEPKRLRRIRRKKAAFNDVSGISSPAVLHTAAAKQERRS 325

Query: 49  NPIWCSLVASEDQEG 5
            P+W SL+ASE+QEG
Sbjct: 326 GPVWFSLLASEEQEG 340


>emb|CBI35207.3| unnamed protein product [Vitis vinifera]
          Length = 425

 Score =  134 bits (338), Expect = 8e-30
 Identities = 85/191 (44%), Positives = 113/191 (59%), Gaps = 2/191 (1%)
 Frame = -2

Query: 571 LRGSSFSVEKQIKKXXXXXXXXXXXXSR-ETLTKLTQNIRQNSSVGEPSSLPRPDKETEN 395
           LRGSSFS+ + IKK            S  E+  K+ Q  +QNSS+ E S   +P+K+TEN
Sbjct: 143 LRGSSFSIVEPIKKEEDSVEDCPESSSSPESRNKVAQTKKQNSSISEASKDQKPNKDTEN 202

Query: 394 GADKWEGEGKVDLWKPLNFLVEVANRSKSSKFTSQG-STSKPEPIDEPKIEGLSRKTKQK 218
            AD W+G  KVDLW PLN LVE ANR+KSSKF SQG S +K EP + P  E   ++   K
Sbjct: 203 DADPWDG--KVDLWTPLNCLVEAANRTKSSKFNSQGTSLAKSEPFNAPDSETKIKEHGHK 260

Query: 217 SKVQNEKGSSDMGPLESVKPKKSRRIHQKKAATFGESGVSPQAVLDATRVRCERKFNPIW 38
            KVQ++K  + + P   VK ++ R + +K+ +  GE     Q VL A   +  R+  PIW
Sbjct: 261 IKVQDDKNGAALLP-GPVKRRRMRAVGRKRISASGEMCTPAQVVLSAAGAKRGRRNCPIW 319

Query: 37  CSLVASEDQEG 5
            SLVASE+Q G
Sbjct: 320 FSLVASENQGG 330


>ref|XP_003520583.1| PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Glycine max]
          Length = 445

 Score =  134 bits (336), Expect = 1e-29
 Identities = 91/196 (46%), Positives = 117/196 (59%), Gaps = 7/196 (3%)
 Frame = -2

Query: 571 LRGSSFSVEKQIKKXXXXXXXXXXXXSR-ETLTKLTQNIRQNSSVGEPSSLPRPDKETEN 395
           LR +SFS+EK IKK            S  +T  K  QN  Q+ S  E S    P+K +EN
Sbjct: 158 LRSTSFSIEKPIKKEEDLLEDRPDSSSSPDTSYKFAQNSGQSISPCEGSQ-SIPNKGSEN 216

Query: 394 GADKWEGEGKVDLWKPLNFLVEVANRSKSSKFTS-QGSTSKPEPIDEPKIEGLSRKTK-- 224
           GA+ W+   K+DLWKPLNFLVEVA+RSKS K  + QGS +K E     + +   +KTK  
Sbjct: 217 GAEPWDA--KLDLWKPLNFLVEVASRSKSFKSNNVQGSDAKLETNQVNESDSQVQKTKNK 274

Query: 223 ---QKSKVQNEKGSSDMGPLESVKPKKSRRIHQKKAATFGESGVSPQAVLDATRVRCERK 53
              +K+K+++EK S      ++ KP K RRI +KK    GESG+SPQAVLD+   R  R 
Sbjct: 275 ENKRKAKIEDEKSSPYPVSSDTAKPNKLRRIRKKKETASGESGISPQAVLDSASNRLSRT 334

Query: 52  FNPIWCSLVASEDQEG 5
             PIW SLVASE+QEG
Sbjct: 335 -GPIWFSLVASENQEG 349


Top