BLASTX nr result

ID: Panax21_contig00028233 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00028233
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI25947.3| unnamed protein product [Vitis vinifera]              169   3e-40
ref|XP_002274678.1| PREDICTED: uncharacterized protein LOC100244...   169   3e-40
ref|XP_002519306.1| nucleic acid binding protein, putative [Rici...   162   3e-38
gb|ABA95965.1| expressed protein [Oryza sativa Japonica Group] g...   160   8e-38
gb|EAY82490.1| hypothetical protein OsI_37707 [Oryza sativa Indi...   160   8e-38

>emb|CBI25947.3| unnamed protein product [Vitis vinifera]
          Length = 182

 Score =  169 bits (427), Expect = 3e-40
 Identities = 81/115 (70%), Positives = 98/115 (85%), Gaps = 2/115 (1%)
 Frame = +3

Query: 12  SSSLQIKDG--DDGGVQITCFSDVSDDMSLHFQIIRLPNQIYTWIGCNSAKFGHLYAAAP 185
           +S +  KDG  +D GVQ+TCF++VSDD++LHFQIIRL  QIY WIG NSAK GH+YAAA 
Sbjct: 47  NSVIDNKDGGVNDDGVQVTCFTEVSDDVTLHFQIIRLHKQIYAWIGSNSAKLGHMYAAAS 106

Query: 186 TRPNNTVSVASLLAGASDSTGSGIARRIVLKTGLNVILACNIPKDSPMLEVNAEK 350
           TRPNNTVSV S+L GASD+TGSGIARR+ L+TG+N+ILACNIPK++PMLE  AEK
Sbjct: 107 TRPNNTVSVTSILGGASDNTGSGIARRLALRTGVNIILACNIPKNNPMLEAEAEK 161


>ref|XP_002274678.1| PREDICTED: uncharacterized protein LOC100244351 [Vitis vinifera]
           gi|359477623|ref|XP_003632004.1| PREDICTED:
           uncharacterized protein LOC100853705 [Vitis vinifera]
           gi|297736789|emb|CBI25990.3| unnamed protein product
           [Vitis vinifera]
          Length = 138

 Score =  169 bits (427), Expect = 3e-40
 Identities = 81/115 (70%), Positives = 98/115 (85%), Gaps = 2/115 (1%)
 Frame = +3

Query: 12  SSSLQIKDG--DDGGVQITCFSDVSDDMSLHFQIIRLPNQIYTWIGCNSAKFGHLYAAAP 185
           +S +  KDG  +D GVQ+TCF++VSDD++LHFQIIRL  QIY WIG NSAK GH+YAAA 
Sbjct: 3   NSVIDNKDGGVNDDGVQVTCFTEVSDDVTLHFQIIRLHKQIYAWIGSNSAKLGHMYAAAS 62

Query: 186 TRPNNTVSVASLLAGASDSTGSGIARRIVLKTGLNVILACNIPKDSPMLEVNAEK 350
           TRPNNTVSV S+L GASD+TGSGIARR+ L+TG+N+ILACNIPK++PMLE  AEK
Sbjct: 63  TRPNNTVSVTSILGGASDNTGSGIARRLALRTGVNIILACNIPKNNPMLEAEAEK 117


>ref|XP_002519306.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223541621|gb|EEF43170.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 455

 Score =  162 bits (409), Expect = 3e-38
 Identities = 80/114 (70%), Positives = 94/114 (82%), Gaps = 3/114 (2%)
 Frame = +3

Query: 3   NSSSSSLQIKDG---DDGGVQITCFSDVSDDMSLHFQIIRLPNQIYTWIGCNSAKFGHLY 173
           +SSSS  Q  D    D GG+QI CF+++ DD++LH+QIIR P Q+Y WI C+SAK GHLY
Sbjct: 34  SSSSSPAQQVDVTAVDGGGLQINCFTEIVDDVTLHYQIIRFPKQMYAWISCSSAKLGHLY 93

Query: 174 AAAPTRPNNTVSVASLLAGASDSTGSGIARRIVLKTGLNVILACNIPKDSPMLE 335
           AAA TRPNNTVSVA LL GASD+TGSGIARR+VLKTGLNVI+ACNIPK+ PMLE
Sbjct: 94  AAAATRPNNTVSVACLLGGASDNTGSGIARRLVLKTGLNVIIACNIPKNIPMLE 147


>gb|ABA95965.1| expressed protein [Oryza sativa Japonica Group]
           gi|215768938|dbj|BAH01167.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 161

 Score =  160 bits (406), Expect = 8e-38
 Identities = 77/120 (64%), Positives = 94/120 (78%), Gaps = 4/120 (3%)
 Frame = +3

Query: 3   NSSSSSLQIKDGDD----GGVQITCFSDVSDDMSLHFQIIRLPNQIYTWIGCNSAKFGHL 170
           +SS +  Q++   D    GGVQ+TCF++   D+ LHFQIIR   QIY W+GCN+AKFGHL
Sbjct: 17  SSSRTDSQVESSGDPSSEGGVQVTCFTEDLHDVILHFQIIRFSKQIYAWVGCNTAKFGHL 76

Query: 171 YAAAPTRPNNTVSVASLLAGASDSTGSGIARRIVLKTGLNVILACNIPKDSPMLEVNAEK 350
           YAAA TRP N VSV S+L G SD+TGSG+ARR+VLKTGLN++LACNIPKDSPMLE  AE+
Sbjct: 77  YAAASTRPGNGVSVTSVLGGTSDNTGSGMARRLVLKTGLNIVLACNIPKDSPMLEAAAER 136


>gb|EAY82490.1| hypothetical protein OsI_37707 [Oryza sativa Indica Group]
          Length = 161

 Score =  160 bits (406), Expect = 8e-38
 Identities = 77/120 (64%), Positives = 94/120 (78%), Gaps = 4/120 (3%)
 Frame = +3

Query: 3   NSSSSSLQIKDGDD----GGVQITCFSDVSDDMSLHFQIIRLPNQIYTWIGCNSAKFGHL 170
           +SS +  Q++   D    GGVQ+TCF++   D+ LHFQIIR   QIY W+GCN+AKFGHL
Sbjct: 17  SSSRTDSQVESSGDPSSEGGVQVTCFTEDLHDVILHFQIIRFSKQIYAWVGCNTAKFGHL 76

Query: 171 YAAAPTRPNNTVSVASLLAGASDSTGSGIARRIVLKTGLNVILACNIPKDSPMLEVNAEK 350
           YAAA TRP N VSV S+L G SD+TGSG+ARR+VLKTGLN++LACNIPKDSPMLE  AE+
Sbjct: 77  YAAASTRPGNGVSVTSVLGGTSDNTGSGMARRLVLKTGLNIVLACNIPKDSPMLEAAAER 136


Top