BLASTX nr result
ID: Panax21_contig00027951
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00027951
(440 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containi... 240 8e-62
emb|CBI20961.3| unnamed protein product [Vitis vinifera] 234 7e-60
ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containi... 234 7e-60
ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 226 1e-57
ref|XP_002324255.1| predicted protein [Populus trichocarpa] gi|2... 222 2e-56
>ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 240 bits (613), Expect = 8e-62
Identities = 113/146 (77%), Positives = 132/146 (90%)
Frame = +1
Query: 1 FDLMHERDVISWSTMIVGLSNHGKACEAIQLFHEMQRAKVEPNEITFVGLLSACAHAGFL 180
FD M+ERDVISWSTMIVGL+NHG+A EAI+LF EMQ+AK+EPN ITFVGLLSACAHAG L
Sbjct: 307 FDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLL 366
Query: 181 DQGLRYFDSMRNEYNIEPGIEHYGCFIDLLGRTGCLDRALGLVKSMPMMPDSAIWGSLLS 360
++GLRYF+SM+ +YNIEPG+EHYGC ++LLG +G LD+AL L+K MPM PDSAIWGSLLS
Sbjct: 367 NEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLS 426
Query: 361 SCRTHGNLDIAVIAMEHLLELEPDDT 438
SCR+H NL+IAVIAMEHLLELEP DT
Sbjct: 427 SCRSHSNLEIAVIAMEHLLELEPADT 452
Score = 58.5 bits (140), Expect = 5e-07
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
Frame = +1
Query: 1 FDLMHERDVISWSTMIVGLSNHGKACEAIQLFHEMQRAKVEPNEITFVGLLSACAHAGFL 180
F+ M ++ + SW+ ++ G + G +A++ F MQ +EP+EI+ V +L ACA G L
Sbjct: 206 FEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGAL 265
Query: 181 DQGLRYFDSMRNEYNIEPGIEHYGCFIDLLGRTGCLDRALGLVKSMPMMPDSAIWGSLLS 360
+ G ++ ++ I I++ + G +D L M D W +++
Sbjct: 266 ELG-KWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNER-DVISWSTMIV 323
Query: 361 SCRTHGNLDIAVIAMEHL--LELEPD 432
HG A+ + + ++EP+
Sbjct: 324 GLANHGRAHEAIELFQEMQKAKIEPN 349
>emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 234 bits (596), Expect = 7e-60
Identities = 111/146 (76%), Positives = 129/146 (88%)
Frame = +1
Query: 1 FDLMHERDVISWSTMIVGLSNHGKACEAIQLFHEMQRAKVEPNEITFVGLLSACAHAGFL 180
FD M ERDVISWSTMIVGL+NHG+A EAI+LF EMQ+AK+EP+ ITFVGLL+ACAHAG L
Sbjct: 323 FDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLL 382
Query: 181 DQGLRYFDSMRNEYNIEPGIEHYGCFIDLLGRTGCLDRALGLVKSMPMMPDSAIWGSLLS 360
++GLRYF+SM+ +YNIEPG+EHYGC ++LLG +G LD+AL LVK MP PDS IWGSLLS
Sbjct: 383 NEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLS 442
Query: 361 SCRTHGNLDIAVIAMEHLLELEPDDT 438
SCR+HGNL IAVIAMEHLLELEP DT
Sbjct: 443 SCRSHGNLKIAVIAMEHLLELEPADT 468
Score = 55.5 bits (132), Expect = 4e-06
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Frame = +1
Query: 1 FDLMHERD--VISWSTMIVGLSNHGKACEAIQLFHEMQRAKVEPNEITFVGLLSACAHAG 174
F+ M ERD + SW+ ++ G + G +A++ F MQ +EP+EI+ V +L CA G
Sbjct: 220 FEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLG 279
Query: 175 FLDQGLRYFDSMRNEYNIEPGIEHYGCFIDLLGRTGCLDRALGLVKSMPMMPDSAIWGSL 354
L+ G ++ ++ I I++ + G +D+ L M D W ++
Sbjct: 280 ALELG-KWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKER-DVISWSTM 337
Query: 355 LSSCRTHGNLDIAVIAMEHL--LELEP 429
+ HG A+ + + ++EP
Sbjct: 338 IVGLANHGRAREAIELFQEMQKAKIEP 364
>ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 234 bits (596), Expect = 7e-60
Identities = 111/146 (76%), Positives = 129/146 (88%)
Frame = +1
Query: 1 FDLMHERDVISWSTMIVGLSNHGKACEAIQLFHEMQRAKVEPNEITFVGLLSACAHAGFL 180
FD M ERDVISWSTMIVGL+NHG+A EAI+LF EMQ+AK+EP+ ITFVGLL+ACAHAG L
Sbjct: 307 FDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLL 366
Query: 181 DQGLRYFDSMRNEYNIEPGIEHYGCFIDLLGRTGCLDRALGLVKSMPMMPDSAIWGSLLS 360
++GLRYF+SM+ +YNIEPG+EHYGC ++LLG +G LD+AL LVK MP PDS IWGSLLS
Sbjct: 367 NEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLS 426
Query: 361 SCRTHGNLDIAVIAMEHLLELEPDDT 438
SCR+HGNL IAVIAMEHLLELEP DT
Sbjct: 427 SCRSHGNLKIAVIAMEHLLELEPADT 452
Score = 56.2 bits (134), Expect = 3e-06
Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 2/145 (1%)
Frame = +1
Query: 1 FDLMHERDVISWSTMIVGLSNHGKACEAIQLFHEMQRAKVEPNEITFVGLLSACAHAGFL 180
F+ M ++ + SW+ ++ G + G +A++ F MQ +EP+EI+ V +L CA G L
Sbjct: 206 FEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGAL 265
Query: 181 DQGLRYFDSMRNEYNIEPGIEHYGCFIDLLGRTGCLDRALGLVKSMPMMPDSAIWGSLLS 360
+ G ++ ++ I I++ + G +D+ L M D W +++
Sbjct: 266 ELG-KWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKER-DVISWSTMIV 323
Query: 361 SCRTHGNLDIAVIAMEHL--LELEP 429
HG A+ + + ++EP
Sbjct: 324 GLANHGRAREAIELFQEMQKAKIEP 348
>ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 226 bits (576), Expect = 1e-57
Identities = 108/146 (73%), Positives = 125/146 (85%)
Frame = +1
Query: 1 FDLMHERDVISWSTMIVGLSNHGKACEAIQLFHEMQRAKVEPNEITFVGLLSACAHAGFL 180
F M+ERDVISWSTMIVGL+NHG+A EAI+LF EMQ+AKVEPN ITFVGLLSACAHAG L
Sbjct: 281 FHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLL 340
Query: 181 DQGLRYFDSMRNEYNIEPGIEHYGCFIDLLGRTGCLDRALGLVKSMPMMPDSAIWGSLLS 360
++GL YF+SM + NIEPG+EHYGC ++LLG +G LD+AL L+K MPM PDS IWG L S
Sbjct: 341 NEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSS 400
Query: 361 SCRTHGNLDIAVIAMEHLLELEPDDT 438
SCR+HGNL+I IAMEHLLELEPDDT
Sbjct: 401 SCRSHGNLEIVAIAMEHLLELEPDDT 426
>ref|XP_002324255.1| predicted protein [Populus trichocarpa] gi|222865689|gb|EEF02820.1|
predicted protein [Populus trichocarpa]
Length = 547
Score = 222 bits (566), Expect = 2e-56
Identities = 104/146 (71%), Positives = 123/146 (84%)
Frame = +1
Query: 1 FDLMHERDVISWSTMIVGLSNHGKACEAIQLFHEMQRAKVEPNEITFVGLLSACAHAGFL 180
FD M + DVISWSTMI GL+NHGKA EAI+LF M++AK+EPN ITF+GLLSACAHAGF
Sbjct: 309 FDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFW 368
Query: 181 DQGLRYFDSMRNEYNIEPGIEHYGCFIDLLGRTGCLDRALGLVKSMPMMPDSAIWGSLLS 360
++GL YFDSM +Y+IEP +EHYGC +D+LGR G L +AL +++ MPM PDS IWGSLLS
Sbjct: 369 NEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLS 428
Query: 361 SCRTHGNLDIAVIAMEHLLELEPDDT 438
SCRTH NLDIA+IAMEHL ELEPDDT
Sbjct: 429 SCRTHSNLDIAIIAMEHLEELEPDDT 454
Score = 66.6 bits (161), Expect = 2e-09
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Frame = +1
Query: 1 FDLMHERDVISWSTMIVGLSNHGKACEAIQLFHEMQRAKVEPNEITFVGLLSACAHAGFL 180
FDLM R ++SW+ MI G + G +A+ +F +MQ VEP+EI+ + +L ACA G L
Sbjct: 208 FDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGAL 267
Query: 181 DQGLRYFDSMRNEYNIEPGIEHYGCFIDLLGRTGCLDRALGLVKSMPMMPDSAIWGSLLS 360
+ G ++ + + +++ + GC+ +A L M D W +++
Sbjct: 268 EVG-KWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQM-SKGDVISWSTMIG 325
Query: 361 SCRTHGNLDIAVIAMEHL--LELEPD 432
HG A+ + + ++EP+
Sbjct: 326 GLANHGKAREAIELFKRMKKAKIEPN 351