BLASTX nr result
ID: Panax21_contig00027891
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00027891
(515 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003592393.1| DEAD-box ATP-dependent RNA helicase [Medicag... 70 3e-23
ref|XP_002318866.1| predicted protein [Populus trichocarpa] gi|2... 73 7e-23
ref|XP_002321855.1| predicted protein [Populus trichocarpa] gi|2... 72 6e-21
ref|XP_003555354.1| PREDICTED: xyloglucan galactosyltransferase ... 62 4e-18
ref|XP_004143712.1| PREDICTED: uncharacterized protein LOC101209... 67 4e-16
>ref|XP_003592393.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355481441|gb|AES62644.1| DEAD-box ATP-dependent RNA
helicase [Medicago truncatula]
Length = 877
Score = 69.7 bits (169), Expect(2) = 3e-23
Identities = 43/121 (35%), Positives = 52/121 (42%), Gaps = 37/121 (30%)
Frame = -2
Query: 490 PDGFHPNSPLRMCR---FGRILSTNDVALSSTASPAPHVDSSRGLLLKQCFNDSGSCRVV 320
P GFHP+S + R F R + + A + R +LL QC N GSC V
Sbjct: 292 PTGFHPSSFSDITRWQSFVRNRRRKSLFCFAGAPRRSFRNDFRAVLLNQCRNSGGSCHAV 351
Query: 319 DCGGSKCSN----------------------------------GSVPVFFWKRTAYYQYQ 242
DCGGSKC+N GS+PVFFW+RTAY QYQ
Sbjct: 352 DCGGSKCANGTSAITETFLDSDFCLQPRGDSFTRRSIFDCMVAGSIPVFFWRRTAYLQYQ 411
Query: 241 W 239
W
Sbjct: 412 W 412
Score = 63.5 bits (153), Expect(2) = 3e-23
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Frame = -1
Query: 218 MRSGTSIRGEVDKISKEEVRRMREKVVDLC---MQAKPNEGLKGIKDAFDVVVDGVLRNK 48
+++GTS++ ++ +KEEVR+MREKV++ + AK NEG++G+KDAFD +GVL
Sbjct: 430 VKNGTSVKAVLESFTKEEVRKMREKVIEYIPRMVYAKHNEGIEGVKDAFDYATEGVLTRF 489
Query: 47 REDISGNKEK*C 12
+E + K C
Sbjct: 490 KEQLQPGFHKRC 501
>ref|XP_002318866.1| predicted protein [Populus trichocarpa] gi|222859539|gb|EEE97086.1|
predicted protein [Populus trichocarpa]
Length = 512
Score = 73.2 bits (178), Expect(2) = 7e-23
Identities = 45/121 (37%), Positives = 53/121 (43%), Gaps = 37/121 (30%)
Frame = -2
Query: 490 PDGFHP---NSPLRMCRFGRILSTNDVALSSTASPAPHVDSSRGLLLKQCFNDSGSCRVV 320
P GFHP N + F R + + + A + D RGLLL C N+S SCRVV
Sbjct: 304 PTGFHPRSDNDVVEWQEFVRNRNRKSLFCFAGAKRSKIKDDFRGLLLNHCRNESDSCRVV 363
Query: 319 DCGGSKCSN----------------------------------GSVPVFFWKRTAYYQYQ 242
DC GSKCSN GS+PV FWKRTAY QY+
Sbjct: 364 DCAGSKCSNGTSIILETFLDSVFCLQPRGDSFTRRSIFDCMIAGSIPVLFWKRTAYDQYE 423
Query: 241 W 239
W
Sbjct: 424 W 424
Score = 58.9 bits (141), Expect(2) = 7e-23
Identities = 30/63 (47%), Positives = 48/63 (76%), Gaps = 4/63 (6%)
Frame = -1
Query: 218 MRSGT-SIRGEVDKISKEEVRRMREKVVDLC---MQAKPNEGLKGIKDAFDVVVDGVLRN 51
+++GT SIR +++ S++E+RRMRE+V++ + A+P+EGL+ IKDAFDV +D VLR
Sbjct: 442 VKNGTASIRKVLERYSEDEIRRMRERVIEYIPKFLYARPDEGLETIKDAFDVAIDAVLRR 501
Query: 50 KRE 42
+E
Sbjct: 502 FKE 504
>ref|XP_002321855.1| predicted protein [Populus trichocarpa] gi|222868851|gb|EEF05982.1|
predicted protein [Populus trichocarpa]
Length = 516
Score = 71.6 bits (174), Expect(2) = 6e-21
Identities = 43/121 (35%), Positives = 55/121 (45%), Gaps = 37/121 (30%)
Frame = -2
Query: 490 PDGFHP---NSPLRMCRFGRILSTNDVALSSTASPAPHVDSSRGLLLKQCFNDSGSCRVV 320
P GFHP N ++ F R + ++ + A + + RGLL C N+S SCRVV
Sbjct: 308 PTGFHPRRDNDVVQWQDFVRNRNRKNLFCFAGAKRSKFNNDFRGLLSNHCRNESDSCRVV 367
Query: 319 DCGGSKCSN----------------------------------GSVPVFFWKRTAYYQYQ 242
DC GSKCSN GS+PV FWKR+AYYQY+
Sbjct: 368 DCAGSKCSNGTSLILETFLDSAFCLQPRGDSFTRRSIFDCMIAGSIPVLFWKRSAYYQYE 427
Query: 241 W 239
W
Sbjct: 428 W 428
Score = 53.9 bits (128), Expect(2) = 6e-21
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Frame = -1
Query: 206 TSIRGEVDKISKEEVRRMREKVVDLC---MQAKPNEGLKGIKDAFDVVVDGVLRNKRE 42
TSIR ++ S++ +RRMREKV++ + A+P GL+ IKDAFDV +D VLR +E
Sbjct: 451 TSIRKVLESYSEDRIRRMREKVIEYIPKFVYARPQGGLETIKDAFDVAIDRVLRRFKE 508
>ref|XP_003555354.1| PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog
[Glycine max]
Length = 495
Score = 62.4 bits (150), Expect(2) = 4e-18
Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 37/121 (30%)
Frame = -2
Query: 490 PDGFHPNSPLRMCRFGRILSTNDVALSSTASPAPHV---DSSRGLLLKQCFNDSGSCRVV 320
P GFHP S + R+ + + AP D R +LL QC + SCR V
Sbjct: 285 PTGFHPRSKSDVTRWQSFVRERQRHALFCFAGAPRRAFRDDFRAILLSQCRDSGESCRAV 344
Query: 319 DCGGSKCSN----------------------------------GSVPVFFWKRTAYYQYQ 242
+C G++CSN GS+PVFFW+RTAY QY+
Sbjct: 345 NCTGTRCSNGTSAILETFLDSDFCLQPRGDSFTRRSIFDCMVAGSIPVFFWRRTAYLQYE 404
Query: 241 W 239
W
Sbjct: 405 W 405
Score = 53.5 bits (127), Expect(2) = 4e-18
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 4/63 (6%)
Frame = -1
Query: 218 MRSGT-SIRGEVDKISKEEVRRMREKVVDLC---MQAKPNEGLKGIKDAFDVVVDGVLRN 51
+++GT +++ +++ +KEEVRRMREKV++ + A +GL+G+ DAFDV ++GV +
Sbjct: 423 VKNGTLTVKNVLERFTKEEVRRMREKVIEYIPRLVYANTKQGLEGVNDAFDVAIEGVFKR 482
Query: 50 KRE 42
+E
Sbjct: 483 IKE 485
>ref|XP_004143712.1| PREDICTED: uncharacterized protein LOC101209696 [Cucumis sativus]
Length = 1247
Score = 67.0 bits (162), Expect(2) = 4e-16
Identities = 41/122 (33%), Positives = 55/122 (45%), Gaps = 38/122 (31%)
Frame = -2
Query: 490 PDGFHPNSPLRMCRFGRILSTN---DVALSSTASPAPHVDSSRGLLLKQCFNDSGS-CRV 323
P GFHP S + + + T + + A+ A + R +LL QC N +G CRV
Sbjct: 290 PTGFHPKSLNDISAWQEFIRTRRRTHLFCFAGATRAAFHNDFRAMLLHQCKNSTGEKCRV 349
Query: 322 VDCGGSKCSN----------------------------------GSVPVFFWKRTAYYQY 245
VDC GS+CSN G++PVFFW+RTAYYQY
Sbjct: 350 VDCAGSRCSNGTSAILETFLTSDFCLQPRGDSFTRRSIFDCMVAGAIPVFFWRRTAYYQY 409
Query: 244 QW 239
+W
Sbjct: 410 EW 411
Score = 42.4 bits (98), Expect(2) = 4e-16
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = -1
Query: 206 TSIRGEVDKISKEEVRRMREKVVDLCMQAKPNEGLKGIKDAFDVVVDGVLRNKRE 42
TSI +++ S+EEV+ MRE+V++ K G ++DA DV V+GVLR +E
Sbjct: 434 TSIEAVLERFSREEVKEMRERVIESI--PKFIYGTGEVRDALDVAVEGVLRRFKE 486