BLASTX nr result

ID: Panax21_contig00027377 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00027377
         (406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78200.1| hypothetical protein VITISV_016086 [Vitis vinifera]    67   2e-19
ref|XP_002273185.1| PREDICTED: UPF0496 protein 4 [Vitis vinifera]      67   2e-19
gb|ABK94071.1| unknown [Populus trichocarpa]                           49   1e-11
ref|XP_002311299.1| predicted protein [Populus trichocarpa] gi|2...    49   2e-11
ref|XP_002315065.1| predicted protein [Populus trichocarpa] gi|1...    50   7e-10

>emb|CAN78200.1| hypothetical protein VITISV_016086 [Vitis vinifera]
          Length = 542

 Score = 66.6 bits (161), Expect(2) = 2e-19
 Identities = 42/82 (51%), Positives = 51/82 (62%)
 Frame = -1

Query: 247 RHRRRLIKFVLHLLEIPADSGIPAPDKLRKASDSLVDWEKNSRGLSKRKKGFEIRDQEVL 68
           R RR LI FV+HLL+   +   PAP+KL+KA DSL DW    RG +KR+  FE  D +VL
Sbjct: 110 RQRRLLINFVIHLLDFSGEG--PAPEKLKKARDSLADWANCPRGFTKRR--FE-NDVKVL 164

Query: 67  IRDLVAAIVRIEPRGKRSSVGR 2
           I DL   +    PRGK SSV R
Sbjct: 165 IHDLARGLGN-APRGKISSVER 185



 Score = 53.9 bits (128), Expect(2) = 2e-19
 Identities = 28/58 (48%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
 Frame = -2

Query: 390 PNDFDLISRSFDETILQRLKTLTISG*SPPSISFYWIRLAVNFLSSTHAIV-AVSSNL 220
           PN+F+L+S SFD+ +++RLK L     +PPS++  W+ LAV+FLS+ HA V ++ SNL
Sbjct: 24  PNNFELLSCSFDDALIRRLKAL-----NPPSLTLSWLSLAVDFLSTIHAEVRSLISNL 76


>ref|XP_002273185.1| PREDICTED: UPF0496 protein 4 [Vitis vinifera]
          Length = 337

 Score = 66.6 bits (161), Expect(2) = 2e-19
 Identities = 42/82 (51%), Positives = 51/82 (62%)
 Frame = -1

Query: 247 RHRRRLIKFVLHLLEIPADSGIPAPDKLRKASDSLVDWEKNSRGLSKRKKGFEIRDQEVL 68
           R RR LI FV+HLL+   +   PAP+KL+KA DSL DW    RG +KR+  FE  D +VL
Sbjct: 110 RQRRLLINFVIHLLDFSGEG--PAPEKLKKARDSLADWANCPRGFTKRR--FE-NDVKVL 164

Query: 67  IRDLVAAIVRIEPRGKRSSVGR 2
           I DL   +    PRGK SSV R
Sbjct: 165 IHDLARGLGN-APRGKISSVER 185



 Score = 53.9 bits (128), Expect(2) = 2e-19
 Identities = 28/58 (48%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
 Frame = -2

Query: 390 PNDFDLISRSFDETILQRLKTLTISG*SPPSISFYWIRLAVNFLSSTHAIV-AVSSNL 220
           PN+F+L+S SFD+ +++RLK L     +PPS++  W+ LAV+FLS+ HA V ++ SNL
Sbjct: 24  PNNFELLSCSFDDALIRRLKAL-----NPPSLTLSWLSLAVDFLSTIHAEVRSLISNL 76


>gb|ABK94071.1| unknown [Populus trichocarpa]
          Length = 335

 Score = 48.5 bits (114), Expect(2) = 1e-11
 Identities = 30/79 (37%), Positives = 46/79 (58%)
 Frame = -1

Query: 247 RHRRRLIKFVLHLLEIPADSGIPAPDKLRKASDSLVDWEKNSRGLSKRKKGFEIRDQEVL 68
           RHRR L+KF LHL    +++     +KLR+A  SL DW+ N +G     + +  ++ E L
Sbjct: 111 RHRRLLLKFALHLFNNNSNNNSEDAEKLRRARASLTDWDNNLKGY----RYYSSKNLEHL 166

Query: 67  IRDLVAAIVRIEPRGKRSS 11
           + DL A +++  PR K SS
Sbjct: 167 VIDL-ALMLKEVPRCKISS 184



 Score = 45.8 bits (107), Expect(2) = 1e-11
 Identities = 26/52 (50%), Positives = 35/52 (67%)
 Frame = -2

Query: 402 KRCAPNDFDLISRSFDETILQRLKTLTISG*SPPSISFYWIRLAVNFLSSTH 247
           K+    +FDLIS+SFDE+IL+RL TL  S  S  +I+  W+  A+ FLS TH
Sbjct: 20  KKKKKKEFDLISQSFDESILRRLNTLCNSH-SSVTINLSWLSSALAFLSFTH 70


>ref|XP_002311299.1| predicted protein [Populus trichocarpa] gi|222851119|gb|EEE88666.1|
           predicted protein [Populus trichocarpa]
          Length = 334

 Score = 48.5 bits (114), Expect(2) = 2e-11
 Identities = 30/79 (37%), Positives = 46/79 (58%)
 Frame = -1

Query: 247 RHRRRLIKFVLHLLEIPADSGIPAPDKLRKASDSLVDWEKNSRGLSKRKKGFEIRDQEVL 68
           RHRR L+KF LHL    +++     +KLR+A  SL DW+ N +G     + +  ++ E L
Sbjct: 110 RHRRLLLKFALHLFNNNSNNNSEDAEKLRRARASLTDWDNNLKGY----RYYSSKNLEHL 165

Query: 67  IRDLVAAIVRIEPRGKRSS 11
           + DL A +++  PR K SS
Sbjct: 166 VIDL-ALMLKEVPRCKISS 183



 Score = 45.1 bits (105), Expect(2) = 2e-11
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = -2

Query: 384 DFDLISRSFDETILQRLKTLTISG*SPPSISFYWIRLAVNFLSSTH 247
           +FDLIS+SFDE+IL+RL TL  S  S  +I+  W+  A+ FLS TH
Sbjct: 25  EFDLISQSFDESILRRLNTLCNSH-SSVTINLSWLSSALAFLSFTH 69


>ref|XP_002315065.1| predicted protein [Populus trichocarpa] gi|118486705|gb|ABK95189.1|
           unknown [Populus trichocarpa]
           gi|222864105|gb|EEF01236.1| predicted protein [Populus
           trichocarpa]
          Length = 363

 Score = 50.1 bits (118), Expect(2) = 7e-10
 Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
 Frame = -2

Query: 402 KRCAPNDFDLISRSFDETILQRLKTLT-ISG*SPPS--ISFYWIRLAVNFLSSTH 247
           K  A   FDL S SFDE++L+RLKTLT  S  SPPS  I+  W+  A++FLS TH
Sbjct: 25  KDAAHMKFDLFSHSFDESLLRRLKTLTNSSSSSPPSVAINLSWLSSALDFLSYTH 79



 Score = 38.1 bits (87), Expect(2) = 7e-10
 Identities = 28/79 (35%), Positives = 40/79 (50%)
 Frame = -1

Query: 247 RHRRRLIKFVLHLLEIPADSGIPAPDKLRKASDSLVDWEKNSRGLSKRKKGFEIRDQEVL 68
           RHRR ++ F LH+L    ++G    +KL +A  SL DW  N +G           + E L
Sbjct: 120 RHRRLVLSFALHVL----NNGSEDQEKLTRARVSLSDWVNNYKGPIFDSN----NNLENL 171

Query: 67  IRDLVAAIVRIEPRGKRSS 11
            RDL   +  + PRGK S+
Sbjct: 172 ARDLALRLKEV-PRGKISA 189


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