BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00026863
         (405 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283496.2| PREDICTED: pre-mRNA-processing factor 40 hom...    97   2e-18
emb|CBI19367.3| unnamed protein product [Vitis vinifera]               97   2e-18
gb|AAF78276.1|AC020576_20 Contains similarity to formin binding ...    58   7e-07
gb|AAF69150.1|AC007915_2 F27F5.2 [Arabidopsis thaliana]                57   1e-06
ref|NP_175113.2| pre-mRNA-processing protein 40A [Arabidopsis th...    57   1e-06

>ref|XP_002283496.2| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Vitis
           vinifera]
          Length = 1020

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 60/119 (50%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
 Frame = -3

Query: 343 MANNLQSSGGQALRPPPIGSMGSQNFGPP--FQFRPMVPGQQGQ-FMPTSSASQQFHPVG 173
           MANN QSSG Q LRPP +GSMG QNFGPP   QFRP VPGQQG  F+P  +ASQQF P+G
Sbjct: 15  MANNPQSSGAQPLRPPAVGSMGPQNFGPPLSMQFRPAVPGQQGHPFIP--AASQQFRPIG 72

Query: 172 HGI-------XXXXXXXXXXXXXXXXXQTRSLQPVPAAPSSQATQMPYFQQNMSYASGS 17
             I                          R  QP P APSSQ   MPY QQN    S S
Sbjct: 73  QNISSPNVGGPSGQNQPPQFSQAMQQLPPRPNQPGPIAPSSQPIPMPYIQQNRPLTSSS 131


>emb|CBI19367.3| unnamed protein product [Vitis vinifera]
          Length = 1030

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 60/119 (50%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
 Frame = -3

Query: 343 MANNLQSSGGQALRPPPIGSMGSQNFGPP--FQFRPMVPGQQGQ-FMPTSSASQQFHPVG 173
           MANN QSSG Q LRPP +GSMG QNFGPP   QFRP VPGQQG  F+P  +ASQQF P+G
Sbjct: 1   MANNPQSSGAQPLRPPAVGSMGPQNFGPPLSMQFRPAVPGQQGHPFIP--AASQQFRPIG 58

Query: 172 HGI-------XXXXXXXXXXXXXXXXXQTRSLQPVPAAPSSQATQMPYFQQNMSYASGS 17
             I                          R  QP P APSSQ   MPY QQN    S S
Sbjct: 59  QNISSPNVGGPSGQNQPPQFSQAMQQLPPRPNQPGPIAPSSQPIPMPYIQQNRPLTSSS 117


>gb|AAF78276.1|AC020576_20 Contains similarity to formin binding protein 11 from Mus musculus
           gb|AF135439 and contains multiple FF PF|01846 and WW
           PF|00397 domains. EST gb|AI997587 comes from this gene
           [Arabidopsis thaliana]
          Length = 919

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 47/114 (41%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
 Frame = -3

Query: 343 MANNL-QSSGGQALRPPPIGSMGSQNFGPPFQFRPMVPGQQGQ-FMPTSSASQQFHPVGH 170
           MANN  QSSG Q L                 QFRPMVPGQQGQ F+P  +ASQ FHP GH
Sbjct: 1   MANNPPQSSGTQTLFQ---------------QFRPMVPGQQGQHFVP--AASQPFHPYGH 43

Query: 169 ---GIXXXXXXXXXXXXXXXXXQTRSLQPVPAAPSSQATQMPYFQQNMSYASGS 17
               +                   R  QPV    SSQA  +PY Q N    SGS
Sbjct: 44  VPPNVQSQPPQYSQPIQQQQLFPVRPGQPVHITSSSQAVSVPYIQTNKILTSGS 97


>gb|AAF69150.1|AC007915_2 F27F5.2 [Arabidopsis thaliana]
          Length = 937

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 37/83 (44%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = -3

Query: 253 QFRPMVPGQQGQ-FMPTSSASQQFHPVGH---GIXXXXXXXXXXXXXXXXXQTRSLQPVP 86
           QFRPMVPGQQGQ F+P  +ASQ FHP GH    +                   R  QPV 
Sbjct: 13  QFRPMVPGQQGQHFVP--AASQPFHPYGHVPPNVQSQPPQYSQPIQQQQLFPVRPGQPVH 70

Query: 85  AAPSSQATQMPYFQQNMSYASGS 17
              SSQA  +PY Q N    SGS
Sbjct: 71  ITSSSQAVSVPYIQTNKILTSGS 93


>ref|NP_175113.2| pre-mRNA-processing protein 40A [Arabidopsis thaliana]
           gi|395406802|sp|B6EUA9.1|PR40A_ARATH RecName:
           Full=Pre-mRNA-processing protein 40A; AltName:
           Full=Mediator of RNA polymerase II transcription subunit
           35a gi|332193941|gb|AEE32062.1| pre-mRNA-processing
           protein 40A [Arabidopsis thaliana]
          Length = 958

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 37/83 (44%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = -3

Query: 253 QFRPMVPGQQGQ-FMPTSSASQQFHPVGH---GIXXXXXXXXXXXXXXXXXQTRSLQPVP 86
           QFRPMVPGQQGQ F+P  +ASQ FHP GH    +                   R  QPV 
Sbjct: 12  QFRPMVPGQQGQHFVP--AASQPFHPYGHVPPNVQSQPPQYSQPIQQQQLFPVRPGQPVH 69

Query: 85  AAPSSQATQMPYFQQNMSYASGS 17
              SSQA  +PY Q N    SGS
Sbjct: 70  ITSSSQAVSVPYIQTNKILTSGS 92