BLASTX nr result

ID: Panax21_contig00026860 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00026860
         (648 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78551.1| hypothetical protein VITISV_003243 [Vitis vinifera]   258   9e-67
ref|XP_002276435.1| PREDICTED: zinc finger CCCH domain-containin...   257   1e-66
ref|XP_002314462.1| predicted protein [Populus trichocarpa] gi|2...   251   1e-64
ref|XP_002330352.1| predicted protein [Populus trichocarpa] gi|2...   241   1e-61
ref|XP_002516892.1| nucleic acid binding protein, putative [Rici...   238   7e-61

>emb|CAN78551.1| hypothetical protein VITISV_003243 [Vitis vinifera]
          Length = 518

 Score =  258 bits (658), Expect = 9e-67
 Identities = 130/216 (60%), Positives = 143/216 (66%), Gaps = 1/216 (0%)
 Frame = +3

Query: 3   VQS-SVPSSQQYGVVTGDWPVARSALLPGSYMPGTYGSXXXXXXXXXXXXWNPYQAALTS 179
           VQS SVPSSQQYG+V     VAR  LLP SY+ G Y              W+ Y A ++ 
Sbjct: 235 VQSPSVPSSQQYGLV-----VARPPLLPSSYIHGPYSPVLIPPGMVPFPGWSHYPAPVSP 289

Query: 180 VVSPSAQSSVGAGPICGLTQLSSSAPAYAGPYLSMPSPAGPSGISQKEHAFPERPGQPEC 359
           V SPS Q +VG+G + GLT LS SAPAY GPY  +PS  GPS  SQKE  FPERPGQPEC
Sbjct: 290 VASPSTQPTVGSGQMYGLTPLSPSAPAYTGPYTPLPSSVGPSSSSQKEQIFPERPGQPEC 349

Query: 360 QYYMKTGDCKFGSSCKYHHPSQWSGPKTNFVLSAMSLPLRPGEPLCSHYALTGGCKFGAS 539
           QYYM+TGDCKFGSSCKYHHP +W  PKTN VLS M LPLRPG P C+HYA  G CKFG +
Sbjct: 350 QYYMRTGDCKFGSSCKYHHPPEWDTPKTNCVLSPMGLPLRPGAPQCTHYAQRGICKFGPT 409

Query: 540 CKFDHPMEXXXXXXXXXXXXDMAVVPYPVGSSMPTL 647
           CKFDHPM             DM V PYPVGSSM TL
Sbjct: 410 CKFDHPMGTLSYSPSASSLADMPVAPYPVGSSMGTL 445



 Score =  111 bits (278), Expect = 1e-22
 Identities = 48/76 (63%), Positives = 54/76 (71%)
 Frame = +3

Query: 330 FPERPGQPECQYYMKTGDCKFGSSCKYHHPSQWSGPKTNFVLSAMSLPLRPGEPLCSHYA 509
           FPER GQP CQ+YMKTG CKFG+SCKYHHP Q  G  +   L+    PLRPGE  CS+Y 
Sbjct: 132 FPERVGQPVCQFYMKTGTCKFGASCKYHHPRQGGGTVSPVTLNYFGYPLRPGEKECSYYV 191

Query: 510 LTGGCKFGASCKFDHP 557
            TG CKFG +CKF HP
Sbjct: 192 KTGLCKFGETCKFHHP 207



 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +3

Query: 303 SGISQKEHAFPERPGQPECQYYMKTGDCKFGSSCKYHHP 419
           S ++     +P RPG+ EC YY+KTG CKFG +CK+HHP
Sbjct: 169 SPVTLNYFGYPLRPGEKECSYYVKTGLCKFGETCKFHHP 207


>ref|XP_002276435.1| PREDICTED: zinc finger CCCH domain-containing protein 32 [Vitis
           vinifera] gi|297736890|emb|CBI26091.3| unnamed protein
           product [Vitis vinifera]
          Length = 478

 Score =  257 bits (657), Expect = 1e-66
 Identities = 130/216 (60%), Positives = 142/216 (65%), Gaps = 1/216 (0%)
 Frame = +3

Query: 3   VQS-SVPSSQQYGVVTGDWPVARSALLPGSYMPGTYGSXXXXXXXXXXXXWNPYQAALTS 179
           VQS SVPSSQQYG+V     VAR  LLP SY  G Y              W+ Y A ++ 
Sbjct: 195 VQSPSVPSSQQYGLV-----VARPPLLPSSYFHGPYSPVLIPPGMVPFPGWSHYPAPVSP 249

Query: 180 VVSPSAQSSVGAGPICGLTQLSSSAPAYAGPYLSMPSPAGPSGISQKEHAFPERPGQPEC 359
           V SPS Q +VG+G + GLT LS SAPAY GPY  +PS  GPS  SQKE  FPERPGQPEC
Sbjct: 250 VASPSTQPTVGSGQMYGLTPLSPSAPAYTGPYTPLPSSVGPSSSSQKEQIFPERPGQPEC 309

Query: 360 QYYMKTGDCKFGSSCKYHHPSQWSGPKTNFVLSAMSLPLRPGEPLCSHYALTGGCKFGAS 539
           QYYM+TGDCKFGSSCKYHHP +W  PKTN VLS M LPLRPG P C+HYA  G CKFG +
Sbjct: 310 QYYMRTGDCKFGSSCKYHHPPEWDTPKTNCVLSPMGLPLRPGAPQCTHYAQRGICKFGPT 369

Query: 540 CKFDHPMEXXXXXXXXXXXXDMAVVPYPVGSSMPTL 647
           CKFDHPM             DM V PYPVGSSM TL
Sbjct: 370 CKFDHPMGTLSYSPSASSLADMPVAPYPVGSSMGTL 405



 Score =  111 bits (278), Expect = 1e-22
 Identities = 48/76 (63%), Positives = 54/76 (71%)
 Frame = +3

Query: 330 FPERPGQPECQYYMKTGDCKFGSSCKYHHPSQWSGPKTNFVLSAMSLPLRPGEPLCSHYA 509
           FPER GQP CQ+YMKTG CKFG+SCKYHHP Q  G  +   L+    PLRPGE  CS+Y 
Sbjct: 92  FPERVGQPVCQFYMKTGTCKFGASCKYHHPRQGGGTVSPVTLNYFGYPLRPGEKECSYYV 151

Query: 510 LTGGCKFGASCKFDHP 557
            TG CKFG +CKF HP
Sbjct: 152 KTGLCKFGETCKFHHP 167



 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +3

Query: 303 SGISQKEHAFPERPGQPECQYYMKTGDCKFGSSCKYHHP 419
           S ++     +P RPG+ EC YY+KTG CKFG +CK+HHP
Sbjct: 129 SPVTLNYFGYPLRPGEKECSYYVKTGLCKFGETCKFHHP 167


>ref|XP_002314462.1| predicted protein [Populus trichocarpa] gi|222863502|gb|EEF00633.1|
           predicted protein [Populus trichocarpa]
          Length = 456

 Score =  251 bits (640), Expect = 1e-64
 Identities = 123/212 (58%), Positives = 141/212 (66%)
 Frame = +3

Query: 12  SVPSSQQYGVVTGDWPVARSALLPGSYMPGTYGSXXXXXXXXXXXXWNPYQAALTSVVSP 191
           SVPSSQQYGV+     VAR  LLPGSY+ G YG             W+PY A ++ V SP
Sbjct: 197 SVPSSQQYGVM-----VARPPLLPGSYVQGPYGPVLLSPSLVPYPSWSPYPAPVSPVASP 251

Query: 192 SAQSSVGAGPICGLTQLSSSAPAYAGPYLSMPSPAGPSGISQKEHAFPERPGQPECQYYM 371
           +AQ +VG+G + G++ LS SAPAY G Y S+P+  GPS  SQKEH FPERPGQPECQYYM
Sbjct: 252 NAQPAVGSGSVYGISPLSPSAPAYTGAYQSIPTAKGPSSSSQKEHVFPERPGQPECQYYM 311

Query: 372 KTGDCKFGSSCKYHHPSQWSGPKTNFVLSAMSLPLRPGEPLCSHYALTGGCKFGASCKFD 551
           KTGDCKF SSC+YHHP +    KTN VLS M LPLRPG P C+HY   G CKFG +CKFD
Sbjct: 312 KTGDCKFESSCRYHHPPELVTSKTNVVLSPMGLPLRPGAPTCTHYTQHGQCKFGPACKFD 371

Query: 552 HPMEXXXXXXXXXXXXDMAVVPYPVGSSMPTL 647
           HPM             DM V PYPVGSS+ TL
Sbjct: 372 HPMGTLSYSPSASSLADMPVAPYPVGSSIGTL 403



 Score =  106 bits (264), Expect = 4e-21
 Identities = 49/96 (51%), Positives = 57/96 (59%)
 Frame = +3

Query: 330 FPERPGQPECQYYMKTGDCKFGSSCKYHHPSQWSGPKTNFVLSAMSLPLRPGEPLCSHYA 509
           FPER GQP CQYYM+TG CKFG+SCKY+HP Q         L+    PLRPGE  C++Y 
Sbjct: 90  FPERVGQPLCQYYMRTGTCKFGASCKYNHPKQGGSSVRPVSLNYYGYPLRPGERECTYYI 149

Query: 510 LTGGCKFGASCKFDHPMEXXXXXXXXXXXXDMAVVP 617
            TG CKFGA+CKF HP               +A VP
Sbjct: 150 KTGQCKFGATCKFHHPQPANMQIPAQSLAPQVASVP 185



 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 36/85 (42%), Positives = 52/85 (61%)
 Frame = +3

Query: 309 ISQKEHAFPERPGQPECQYYMKTGDCKFGSSCKYHHPSQWSGPKTNFVLSAMSLPLRPGE 488
           I + E  +PERP + +C YY++TG C +G+ C+Y+HP   +             P R G+
Sbjct: 37  IGETESEYPERPNEQDCMYYLRTGFCGYGARCRYNHPRDRTAVLGAARAGGGEFPERVGQ 96

Query: 489 PLCSHYALTGGCKFGASCKFDHPME 563
           PLC +Y  TG CKFGASCK++HP +
Sbjct: 97  PLCQYYMRTGTCKFGASCKYNHPKQ 121



 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = +3

Query: 219 PICGLTQLSSSAPAYAGPYLSMPSPAGPS--GISQKEHAFPERPGQPECQYYMKTGDCKF 392
           P+C     + +    A    + P   G S   +S   + +P RPG+ EC YY+KTG CKF
Sbjct: 97  PLCQYYMRTGTCKFGASCKYNHPKQGGSSVRPVSLNYYGYPLRPGERECTYYIKTGQCKF 156

Query: 393 GSSCKYHHP 419
           G++CK+HHP
Sbjct: 157 GATCKFHHP 165


>ref|XP_002330352.1| predicted protein [Populus trichocarpa] gi|222871556|gb|EEF08687.1|
           predicted protein [Populus trichocarpa]
          Length = 477

 Score =  241 bits (614), Expect = 1e-61
 Identities = 121/216 (56%), Positives = 141/216 (65%), Gaps = 1/216 (0%)
 Frame = +3

Query: 3   VQS-SVPSSQQYGVVTGDWPVARSALLPGSYMPGTYGSXXXXXXXXXXXXWNPYQAALTS 179
           VQS SVPSSQQYGV+     VAR  LLPGSY+ G YG             WNPY A ++ 
Sbjct: 193 VQSPSVPSSQQYGVM-----VARPPLLPGSYVQGPYGPVLLSPSVVPYPSWNPYPAPVSP 247

Query: 180 VVSPSAQSSVGAGPICGLTQLSSSAPAYAGPYLSMPSPAGPSGISQKEHAFPERPGQPEC 359
           V SP+ Q +VG+G + G++ LS SAPAY G + S+P   GPS  +QKEH FPERPGQPEC
Sbjct: 248 VASPNTQPAVGSGSVYGMSALSPSAPAYTGAFQSIPPATGPSSSTQKEHLFPERPGQPEC 307

Query: 360 QYYMKTGDCKFGSSCKYHHPSQWSGPKTNFVLSAMSLPLRPGEPLCSHYALTGGCKFGAS 539
           QYY+KTGDCKF SSC+YHHP +    K+N VLS + LPLRPG P CSHY   G CKFG +
Sbjct: 308 QYYIKTGDCKFRSSCRYHHPPELVVSKSNVVLSPIGLPLRPGAPTCSHYTQRGQCKFGPA 367

Query: 540 CKFDHPMEXXXXXXXXXXXXDMAVVPYPVGSSMPTL 647
           CKFDHPM             DM V PY VGSS+ TL
Sbjct: 368 CKFDHPMGTLSYSPSASSLADMPVAPYLVGSSIGTL 403



 Score =  113 bits (282), Expect = 3e-23
 Identities = 51/98 (52%), Positives = 60/98 (61%)
 Frame = +3

Query: 330 FPERPGQPECQYYMKTGDCKFGSSCKYHHPSQWSGPKTNFVLSAMSLPLRPGEPLCSHYA 509
           +PER GQP CQYYM+TG CKFG+SCKYHHP Q  G  +   L+    PLRPGE  C++Y 
Sbjct: 90  YPERAGQPLCQYYMRTGTCKFGASCKYHHPKQGGGSASPVSLNYYGYPLRPGERECTYYI 149

Query: 510 LTGGCKFGASCKFDHPMEXXXXXXXXXXXXDMAVVPYP 623
            TG CKFGA+CKF HP               +A VP P
Sbjct: 150 KTGQCKFGATCKFHHPQPGNIQIPAQSLAPQIAPVPGP 187



 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
 Frame = +3

Query: 243 SSSAPAY----AGPYLSMPSPAGPSGISQKEHAFPERPGQPECQYYMKTGDCKFGSSCKY 410
           S S PA     +GP   +       G+ + E  +PER  + +C YY++TG C +G+ C+Y
Sbjct: 11  SQSDPALEWTGSGPETGLEEGVWQLGLGETESEYPERSNEQDCMYYLRTGFCGYGARCRY 70

Query: 411 HHPSQWSGPKTNFVLSAMSLPLRPGEPLCSHYALTGGCKFGASCKFDHPME 563
           +HP   +             P R G+PLC +Y  TG CKFGASCK+ HP +
Sbjct: 71  NHPRDRNAVLGAARAGGAEYPERAGQPLCQYYMRTGTCKFGASCKYHHPKQ 121



 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +3

Query: 219 PICGLTQLSSSAPAYAGPYLSMPSPAGPSG--ISQKEHAFPERPGQPECQYYMKTGDCKF 392
           P+C     + +    A      P   G S   +S   + +P RPG+ EC YY+KTG CKF
Sbjct: 97  PLCQYYMRTGTCKFGASCKYHHPKQGGGSASPVSLNYYGYPLRPGERECTYYIKTGQCKF 156

Query: 393 GSSCKYHHP 419
           G++CK+HHP
Sbjct: 157 GATCKFHHP 165


>ref|XP_002516892.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223543980|gb|EEF45506.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 481

 Score =  238 bits (607), Expect = 7e-61
 Identities = 126/217 (58%), Positives = 142/217 (65%), Gaps = 2/217 (0%)
 Frame = +3

Query: 3   VQS-SVPSSQQYGVVTGDWPVARSALLPGSYMPGTYGSXXXXXXXXXXXXWNPYQAALTS 179
           VQS SVPS+QQYG+V     VAR  LLPGSY+ G YG             W+PY   ++ 
Sbjct: 197 VQSPSVPSTQQYGLV-----VARPPLLPGSYVQGPYGPMLVSPGVVPYPSWSPYPGPISP 251

Query: 180 VVSPSAQSSVGAGPICGLTQLSSSAPAYAGPYLSMPSPAGPSGISQKEH-AFPERPGQPE 356
           V SPS Q  VG+G + G+TQLS SAPAY G Y +MPS +     +QKE  +FPERPGQPE
Sbjct: 252 VASPSTQLGVGSG-VYGITQLSPSAPAYTGGYQAMPSSS-----NQKEQPSFPERPGQPE 305

Query: 357 CQYYMKTGDCKFGSSCKYHHPSQWSGPKTNFVLSAMSLPLRPGEPLCSHYALTGGCKFGA 536
           CQYYMKTGDCKFGSSCKYHHP +   PKTN VLS M LPLRPG P C+HY   G CKFG 
Sbjct: 306 CQYYMKTGDCKFGSSCKYHHPPELIAPKTNVVLSPMGLPLRPGAPHCTHYTQRGQCKFGP 365

Query: 537 SCKFDHPMEXXXXXXXXXXXXDMAVVPYPVGSSMPTL 647
           +CKFDHPM             DM V PYPVGSSM TL
Sbjct: 366 ACKFDHPMGSLSYSPSASSLSDMPVAPYPVGSSMGTL 402



 Score =  116 bits (290), Expect = 4e-24
 Identities = 53/102 (51%), Positives = 61/102 (59%)
 Frame = +3

Query: 330 FPERPGQPECQYYMKTGDCKFGSSCKYHHPSQWSGPKTNFVLSAMSLPLRPGEPLCSHYA 509
           FPER GQP CQYYM+TG CKFG+SCKYHHP Q  G      L+    PLRPGE  C++Y 
Sbjct: 90  FPERVGQPVCQYYMRTGTCKFGASCKYHHPKQGGGSANPVSLNYYGYPLRPGEKECTYYV 149

Query: 510 LTGGCKFGASCKFDHPMEXXXXXXXXXXXXDMAVVPYPVGSS 635
            TG CKFG +CKF HP               +A VP PV +S
Sbjct: 150 KTGQCKFGVTCKFHHPQPANLQIQAQSPALQVAPVPAPVPAS 191



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +3

Query: 219 PICGLTQLSSSAPAYAGPYLSMPSPAGPSG--ISQKEHAFPERPGQPECQYYMKTGDCKF 392
           P+C     + +    A      P   G S   +S   + +P RPG+ EC YY+KTG CKF
Sbjct: 97  PVCQYYMRTGTCKFGASCKYHHPKQGGGSANPVSLNYYGYPLRPGEKECTYYVKTGQCKF 156

Query: 393 GSSCKYHHP 419
           G +CK+HHP
Sbjct: 157 GVTCKFHHP 165


Top