BLASTX nr result

ID: Panax21_contig00026815 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00026815
         (861 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274263.1| PREDICTED: zinc finger CCCH domain-containin...   154   3e-35
ref|XP_002515733.1| conserved hypothetical protein [Ricinus comm...   124   3e-26
ref|XP_002309835.1| predicted protein [Populus trichocarpa] gi|2...    98   2e-18
ref|XP_004144583.1| PREDICTED: zinc finger CCCH domain-containin...    92   2e-16
ref|XP_003540851.1| PREDICTED: zinc finger CCCH domain-containin...    71   4e-10

>ref|XP_002274263.1| PREDICTED: zinc finger CCCH domain-containing protein 13 [Vitis
           vinifera] gi|297739310|emb|CBI28961.3| unnamed protein
           product [Vitis vinifera]
          Length = 444

 Score =  154 bits (388), Expect = 3e-35
 Identities = 110/249 (44%), Positives = 142/249 (57%), Gaps = 2/249 (0%)
 Frame = -3

Query: 859 AYNRHSRIQEELLRSQAQLQKLGDQLGSDAAKPGTNEDNTSVSILS-GDTVPNHVMSSWT 683
           A++R+ RIQ++L RS+A+LQKLG QL SD +K   NE+++S+ ILS G+   NHV+S   
Sbjct: 201 AHSRYLRIQDDLKRSEARLQKLGSQLISDTSKHA-NEEDSSIDILSDGEPTGNHVVSPKN 259

Query: 682 ELHKIASPSKKRQRIQV-AEGDDQLKQATPAKGEGLMPETFRLEKLLCRDVHHAQLNNNK 506
                ASPSKKR    + AEG    K    AKGEG +  T R EKL    + HAQL + K
Sbjct: 260 GQQIKASPSKKRAHSNLDAEGS---KPGKVAKGEGFLAGTTRSEKLSRWKMQHAQLMHKK 316

Query: 505 EATVKVNRNNGWRPMSNEGKIKRGKKPTTDIPLDDKLKVSELGFPLPSTSMVAHSXXXXX 326
           EA V  N N+G +P++ EGK KRGK  +  IPL DKLK  E G  LPSTSM AH+     
Sbjct: 317 EAEVLDNGNSGSKPLTIEGKHKRGKNVSASIPLADKLKGLESGLVLPSTSMAAHAVDEVE 376

Query: 325 XXXXXXXXXXXVGNSSARVEKGVANEVRXXXXXXXXXXXPVSQHAYSQYQGDGTENVDVD 146
                         +S  V+K  A E+               ++AYSQY+G+  ENVDVD
Sbjct: 377 TVETEKIETVE--TASREVDKVAAYEIPGLPFPPPPPPPH-PRNAYSQYKGE-DENVDVD 432

Query: 145 GLEEETVYV 119
           G+EEE V V
Sbjct: 433 GIEEEMVDV 441


>ref|XP_002515733.1| conserved hypothetical protein [Ricinus communis]
           gi|223545170|gb|EEF46680.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 448

 Score =  124 bits (311), Expect = 3e-26
 Identities = 95/250 (38%), Positives = 127/250 (50%), Gaps = 3/250 (1%)
 Frame = -3

Query: 859 AYNRHSRIQEELLRSQAQLQKLGDQLGSDAAKPGTNEDNTSVSILSGDTVP-NHVMSSWT 683
           A+  + +IQEEL RSQ +LQKLGDQLGS     G NE+++S++I+S    P +H +S   
Sbjct: 200 AHKHYVQIQEELKRSQGRLQKLGDQLGSGIITTGGNEEDSSINIVSDGEAPGSHAISPRN 259

Query: 682 ELHKIASPSKKRQRIQVAEGD--DQLKQATPAKGEGLMPETFRLEKLLCRDVHHAQLNNN 509
           E+   +SP   R+ I  A+ D  ++ K+A      G   +T  L K    + + A LN N
Sbjct: 260 EVQNNSSP---RENILHAKCDNAEESKKANSTNDGGYHTKTISLGKSFQLNANAALLNIN 316

Query: 508 KEATVKVNRNNGWRPMSNEGKIKRGKKPTTDIPLDDKLKVSELGFPLPSTSMVAHSXXXX 329
           KE  +  N N+  R + NEGK KRGK     I   DKLK SE+G   PSTSM A      
Sbjct: 317 KEVVMADNGNDRDRSIGNEGKQKRGKSVYACISSADKLKGSEIGRLAPSTSMAAFHAIDE 376

Query: 328 XXXXXXXXXXXXVGNSSARVEKGVANEVRXXXXXXXXXXXPVSQHAYSQYQGDGTENVDV 149
                       V  +S ++ KG A               P+ Q  YSQY+G   ENVDV
Sbjct: 377 LVDVEVEESIEVVETASLQIHKGAAAYEVKKLPFLLPLPPPLPQITYSQYKGK-DENVDV 435

Query: 148 DGLEEETVYV 119
           + LEEE V V
Sbjct: 436 EALEEEMVDV 445


>ref|XP_002309835.1| predicted protein [Populus trichocarpa] gi|222852738|gb|EEE90285.1|
           predicted protein [Populus trichocarpa]
          Length = 238

 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 84/240 (35%), Positives = 114/240 (47%), Gaps = 5/240 (2%)
 Frame = -3

Query: 829 ELLRSQAQLQKLGDQLGSDAAKPGTNEDNTSVSILSGDTVPNH-VMSSWTELHKIASPSK 653
           EL RS+ + +KLGDQL S  A    NE+++S+ I++   +  H  +S+  E+ K  + S 
Sbjct: 2   ELYRSEVRFKKLGDQLVSGTATD-CNEEDSSIKIVNDGEINGHCAISAQNEMRKQNNSSP 60

Query: 652 KRQRIQVAEGDDQLKQATPAKGE----GLMPETFRLEKLLCRDVHHAQLNNNKEATVKVN 485
               I+ + G  Q       +G     G   ET RL KL     H  QLN+N E  V  N
Sbjct: 61  ----IEKSLGGKQYTAEKSTQGNLTNGGHQAETLRLSKLSQFHSHPVQLNSNLEFGVVDN 116

Query: 484 RNNGWRPMSNEGKIKRGKKPTTDIPLDDKLKVSELGFPLPSTSMVAHSXXXXXXXXXXXX 305
           RNN   P+ NEGK K+GK  +  IPL DK K S     +PSTSM A +            
Sbjct: 117 RNNSHFPIGNEGKQKKGKGVSASIPL-DKTKGSCSVLQVPSTSMAARAIDDLVEIEMEEN 175

Query: 304 XXXXVGNSSARVEKGVANEVRXXXXXXXXXXXPVSQHAYSQYQGDGTENVDVDGLEEETV 125
                  S   V  G   E R           P+ ++ +S+Y+G+  ENVDV GLEEE V
Sbjct: 176 VEVVENISRGIVRGGATYEAR-SLPFSLPPPPPIHRNTHSKYEGE-DENVDVGGLEEEMV 233


>ref|XP_004144583.1| PREDICTED: zinc finger CCCH domain-containing protein 13-like
           [Cucumis sativus] gi|449493213|ref|XP_004159223.1|
           PREDICTED: zinc finger CCCH domain-containing protein
           13-like [Cucumis sativus]
          Length = 281

 Score = 91.7 bits (226), Expect = 2e-16
 Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 1/248 (0%)
 Frame = -3

Query: 859 AYNRHSRIQEELLRSQAQLQKLGDQLGSDAAKPGTNEDNTSVSILS-GDTVPNHVMSSWT 683
           A+NRHSR+Q+EL RSQ +LQ+LGDQLGSD  K G NE+++S++I+S G+    H    + 
Sbjct: 42  AHNRHSRLQDELSRSQVRLQQLGDQLGSDVNKIGANEEDSSINIVSDGEDPGYHASDPFH 101

Query: 682 ELHKIASPSKKRQRIQVAEGDDQLKQATPAKGEGLMPETFRLEKLLCRDVHHAQLNNNKE 503
           +L +  S SK++    V +  + LK+A   KG        RL +    + H A+   +K 
Sbjct: 102 DLQRDTSASKRKMH-DVQDIAENLKRADLDKGN--KEAVGRLRRNSRWNAHPAKSTYSKI 158

Query: 502 ATVKVNRNNGWRPMSNEGKIKRGKKPTTDIPLDDKLKVSELGFPLPSTSMVAHSXXXXXX 323
             V  N  N   P +NE + +RG + ++ +   DK++  + G  +P TSM  H+      
Sbjct: 159 KMVG-NEINDLIPTANESRQRRG-RTSSSVSSADKVRGLDSGVAVPLTSMAGHAVDEEVD 216

Query: 322 XXXXXXXXXXVGNSSARVEKGVANEVRXXXXXXXXXXXPVSQHAYSQYQGDGTENVDVDG 143
                             E  +                P+ + ++S+Y+G+  +NVDV+ 
Sbjct: 217 IDLEINH-----EEKEPRENSMEAASGSLPFLPPPPPPPIREFSHSKYEGE-DQNVDVEV 270

Query: 142 LEEETVYV 119
           ++EE  Y+
Sbjct: 271 VDEEKEYM 278


>ref|XP_003540851.1| PREDICTED: zinc finger CCCH domain-containing protein 13-like
           [Glycine max]
          Length = 417

 Score = 70.9 bits (172), Expect = 4e-10
 Identities = 72/240 (30%), Positives = 104/240 (43%), Gaps = 2/240 (0%)
 Frame = -3

Query: 856 YNRHSRIQEELLRSQAQLQKLGDQLGSDAAKPGTNEDNTSVSILS-GDTVPNHVMSSWTE 680
           +N  S +Q+EL RSQ +LQ+ GDQL SD ++ G NE++ S+ I+S G+    H ++    
Sbjct: 202 HNHMSELQDELRRSQVRLQRFGDQLVSDISRIGANEEDLSIDIISNGENTGLHPIAKHNV 261

Query: 679 LHKIASPSKKRQRIQVAEGDDQLKQATPAKGEGLMPETFRLEKLLCRDVHHAQLNNNKEA 500
            H  AS  KKR  I+  +  ++LKQ      +G + ET R  K    ++   QL      
Sbjct: 262 EHNDASSHKKRLHIE-HDALEELKQ--DRSKDGHLVETARTRKRSRWNLSD-QLKEESLG 317

Query: 499 TVKVNRNNGWRPMSNEGKIKRG-KKPTTDIPLDDKLKVSELGFPLPSTSMVAHSXXXXXX 323
           T   N     R +  EGK K+G K+P  +                PSTSM AH       
Sbjct: 318 TPD-NGTEVTRSLDLEGKHKKGLKQPRIE---------------APSTSMAAHVVDEDVD 361

Query: 322 XXXXXXXXXXVGNSSARVEKGVANEVRXXXXXXXXXXXPVSQHAYSQYQGDGTENVDVDG 143
                       N +A  E       +            + +  Y QY+G+  ENVDVDG
Sbjct: 362 IERYDGNDI---NETANTENDNGAAYKVKGAPLMLPPALLPRSNYLQYEGN-DENVDVDG 417


Top