BLASTX nr result

ID: Panax21_contig00026730 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00026730
         (677 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521466.1| F-box/LRR-repeat protein, putative [Ricinus ...   239   4e-61
ref|XP_002323795.1| predicted protein [Populus trichocarpa] gi|2...   221   8e-56
emb|CBI34868.3| unnamed protein product [Vitis vinifera]              216   3e-54
ref|XP_002272892.1| PREDICTED: SCF E3 ubiquitin ligase complex F...   216   3e-54
emb|CAN59886.1| hypothetical protein VITISV_026168 [Vitis vinifera]   216   3e-54

>ref|XP_002521466.1| F-box/LRR-repeat protein, putative [Ricinus communis]
           gi|223539365|gb|EEF40956.1| F-box/LRR-repeat protein,
           putative [Ricinus communis]
          Length = 484

 Score =  239 bits (610), Expect = 4e-61
 Identities = 121/181 (66%), Positives = 147/181 (81%)
 Frame = +1

Query: 1   RLPLDLDNNHLLSIAEKFRGLSIFRLQSCCLVIGEGLKNLGVALSDDLEELALINCDVID 180
           RLPLDL+N+HLL+IA  FR LSI RLQSCCLV GEGLK LG+A+S  L+ELALINCDV++
Sbjct: 304 RLPLDLNNDHLLAIAMNFRNLSILRLQSCCLVTGEGLKALGIAVSPVLQELALINCDVVE 363

Query: 181 RERGLLSTLGQNLRKLRKLDLSHNDLLPDKELMSMLVSTNYLQELKLRGCGGLTNAALVT 360
           RE GLL+TLGQNLR+L+KLDLSHN+ L DKE +SMLVS N L ELKLRGC  +T  A++ 
Sbjct: 364 RESGLLATLGQNLRQLKKLDLSHNEFLLDKEFISMLVSCNSLVELKLRGCKRVTGMAMLC 423

Query: 361 MLKNCEHLESVDIMNCCRIEEDAVELFVLNSPRLRLLQIEKCKLSGVVRKLALNKAIEVI 540
           M +NC+ LE VDIM+CC IE +A+ELF LNSPRLR +Q+E+ KLS V RK A +  IEV+
Sbjct: 424 MFRNCKRLECVDIMHCCGIEAEAIELFFLNSPRLRCVQVEESKLSDVARKWAEHNFIEVV 483

Query: 541 A 543
           A
Sbjct: 484 A 484


>ref|XP_002323795.1| predicted protein [Populus trichocarpa] gi|222866797|gb|EEF03928.1|
           predicted protein [Populus trichocarpa]
          Length = 484

 Score =  221 bits (564), Expect = 8e-56
 Identities = 114/181 (62%), Positives = 142/181 (78%)
 Frame = +1

Query: 1   RLPLDLDNNHLLSIAEKFRGLSIFRLQSCCLVIGEGLKNLGVALSDDLEELALINCDVID 180
           RLPLDL N+HL +I   FRGLS  RLQSCCLV GEGLK LG+AL+  LEELALINCDV++
Sbjct: 304 RLPLDLRNDHLSAIGLNFRGLSTLRLQSCCLVSGEGLKALGIALNSGLEELALINCDVVE 363

Query: 181 RERGLLSTLGQNLRKLRKLDLSHNDLLPDKELMSMLVSTNYLQELKLRGCGGLTNAALVT 360
           RE GLL+TLGQ+ R+L+KLDLS+N+ L DKE +SMLVS N L EL LR C GLT  ++V+
Sbjct: 364 RESGLLATLGQHTRQLKKLDLSYNEFLLDKEFISMLVSCNCLIELNLRRCAGLTTVSMVS 423

Query: 361 MLKNCEHLESVDIMNCCRIEEDAVELFVLNSPRLRLLQIEKCKLSGVVRKLALNKAIEVI 540
           M KNC  L+SVDIM+C  I  +AVELFVLNSP+LR LQ+E+ K+S V R  A +K I+++
Sbjct: 424 MFKNCRKLQSVDIMHCDGIGAEAVELFVLNSPQLRGLQVEENKVSDVARSWASHKLIQIV 483

Query: 541 A 543
           +
Sbjct: 484 S 484


>emb|CBI34868.3| unnamed protein product [Vitis vinifera]
          Length = 383

 Score =  216 bits (550), Expect = 3e-54
 Identities = 109/165 (66%), Positives = 137/165 (83%)
 Frame = +1

Query: 1   RLPLDLDNNHLLSIAEKFRGLSIFRLQSCCLVIGEGLKNLGVALSDDLEELALINCDVID 180
           RLPLDL N+HLL+IA+  RGLS  RLQSCCLV G+GLK+L +A+ + LEELALINCDV++
Sbjct: 160 RLPLDLHNSHLLAIAQNCRGLSCIRLQSCCLVTGDGLKSLVIAMGNGLEELALINCDVVE 219

Query: 181 RERGLLSTLGQNLRKLRKLDLSHNDLLPDKELMSMLVSTNYLQELKLRGCGGLTNAALVT 360
           R  G+L+TLGQNL+ LRKLDLS+N++L DKE +SMLVS NYL +L+LRGC  LT AALV+
Sbjct: 220 RVPGMLTTLGQNLKGLRKLDLSYNEMLLDKEFISMLVSCNYLIDLRLRGCRRLTGAALVS 279

Query: 361 MLKNCEHLESVDIMNCCRIEEDAVELFVLNSPRLRLLQIEKCKLS 495
            +KNC++LE++DIMNC  I+ DAVE FVLNS RLR L +E+ KLS
Sbjct: 280 TIKNCKYLENLDIMNCSGIKADAVEAFVLNSRRLRHLLVEESKLS 324


>ref|XP_002272892.1| PREDICTED: SCF E3 ubiquitin ligase complex F-box protein grrA
           [Vitis vinifera]
          Length = 470

 Score =  216 bits (550), Expect = 3e-54
 Identities = 109/165 (66%), Positives = 137/165 (83%)
 Frame = +1

Query: 1   RLPLDLDNNHLLSIAEKFRGLSIFRLQSCCLVIGEGLKNLGVALSDDLEELALINCDVID 180
           RLPLDL N+HLL+IA+  RGLS  RLQSCCLV G+GLK+L +A+ + LEELALINCDV++
Sbjct: 289 RLPLDLHNSHLLAIAQNCRGLSCIRLQSCCLVTGDGLKSLVIAMGNGLEELALINCDVVE 348

Query: 181 RERGLLSTLGQNLRKLRKLDLSHNDLLPDKELMSMLVSTNYLQELKLRGCGGLTNAALVT 360
           R  G+L+TLGQNL+ LRKLDLS+N++L DKE +SMLVS NYL +L+LRGC  LT AALV+
Sbjct: 349 RVPGMLTTLGQNLKGLRKLDLSYNEMLLDKEFISMLVSCNYLIDLRLRGCRRLTGAALVS 408

Query: 361 MLKNCEHLESVDIMNCCRIEEDAVELFVLNSPRLRLLQIEKCKLS 495
            +KNC++LE++DIMNC  I+ DAVE FVLNS RLR L +E+ KLS
Sbjct: 409 TIKNCKYLENLDIMNCSGIKADAVEAFVLNSRRLRHLLVEESKLS 453


>emb|CAN59886.1| hypothetical protein VITISV_026168 [Vitis vinifera]
          Length = 1027

 Score =  216 bits (550), Expect = 3e-54
 Identities = 109/165 (66%), Positives = 136/165 (82%)
 Frame = +1

Query: 1    RLPLDLDNNHLLSIAEKFRGLSIFRLQSCCLVIGEGLKNLGVALSDDLEELALINCDVID 180
            RLPLDL N+HLL+IA+  RGLS  RLQSCCLV G+GLK+L +A+ + LEELALINCDV++
Sbjct: 846  RLPLDLHNSHLLAIAQNCRGLSCIRLQSCCLVTGDGLKSLVIAMGNGLEELALINCDVVE 905

Query: 181  RERGLLSTLGQNLRKLRKLDLSHNDLLPDKELMSMLVSTNYLQELKLRGCGGLTNAALVT 360
            R  G+L+TLGQNL+ LRKLDLS+N++L DKE +SMLVS NYL +L+LRGC  LT AALV+
Sbjct: 906  RVPGMLTTLGQNLKGLRKLDLSYNEMLLDKEFISMLVSCNYLIDLRLRGCRRLTGAALVS 965

Query: 361  MLKNCEHLESVDIMNCCRIEEDAVELFVLNSPRLRLLQIEKCKLS 495
             +KNC++LE +DIMNC  I+ DAVE FVLNS RLR L +E+ KLS
Sbjct: 966  TIKNCKYLEXLDIMNCSGIKADAVEAFVLNSRRLRXLLVEESKLS 1010


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