BLASTX nr result

ID: Panax21_contig00026679 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00026679
         (516 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    81   6e-26
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              83   1e-25
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 83   2e-25
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...    79   2e-25
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    82   4e-25

>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 81.3 bits (199), Expect(2) = 6e-26
 Identities = 42/109 (38%), Positives = 64/109 (58%)
 Frame = +3

Query: 3   FKHHWKTKSLSLSHLCFTDDLLIFCHGDANSVKVIKLCLDLFSSLSGLHINDSKSMCFLS 182
           F  H K K+L L+HLCF DDL+I   G   SV  I   ++LF+  SGL IN  K+  + +
Sbjct: 92  FGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGLQINMEKTTLYTA 151

Query: 183 NVSPDHAEVIFNFLGFQVGRFPAKFLGVPLITSKLSLADCHPLLG*IQN 329
            VS  +  ++ +   F +G+ P ++LG+PL+T +L+  D  PL   I+N
Sbjct: 152 GVSDHNRYMMISRYPFGLGQLPVRYLGLPLVTKRLTKEDLSPLFEQIRN 200



 Score = 61.2 bits (147), Expect(2) = 6e-26
 Identities = 26/60 (43%), Positives = 42/60 (70%)
 Frame = +1

Query: 337 WTNKFLSYAGRL*LIKSVVFAIQSYWSAHFILPASVFKDLKSTMSRFLWKGPSMLKFGAK 516
           WT+++LS+AGRL LI SV+++  ++W + F LP++  K++ S  S FLW GP + +  AK
Sbjct: 205 WTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELHRRKAK 264


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 83.2 bits (204), Expect(2) = 1e-25
 Identities = 42/104 (40%), Positives = 61/104 (58%)
 Frame = +3

Query: 3   FKHHWKTKSLSLSHLCFTDDLLIFCHGDANSVKVIKLCLDLFSSLSGLHINDSKSMCFLS 182
           F +H + K LSL+HL F DDL++   G   S+  I    D+F+  SGL I+  KS  +L+
Sbjct: 214 FGYHSRCKELSLTHLSFADDLMVLSDGKVRSIDGIVEVFDIFAKFSGLKISMEKSTIYLA 273

Query: 183 NVSPDHAEVIFNFLGFQVGRFPAKFLGVPLITSKLSLADCHPLL 314
            V+ D    I N   F VG+ P ++LG+PL+T +L+  D  PLL
Sbjct: 274 GVTEDVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPLL 317



 Score = 58.2 bits (139), Expect(2) = 1e-25
 Identities = 25/54 (46%), Positives = 36/54 (66%)
 Frame = +1

Query: 337 WTNKFLSYAGRL*LIKSVVFAIQSYWSAHFILPASVFKDLKSTMSRFLWKGPSM 498
           WT ++LSYAGRL LI SV+++I ++W A F LP    +++    S FLW GP +
Sbjct: 327 WTTRYLSYAGRLNLITSVLWSICNFWLAAFRLPRECIREIDKICSAFLWSGPDL 380


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 82.8 bits (203), Expect(2) = 2e-25
 Identities = 42/102 (41%), Positives = 62/102 (60%)
 Frame = +3

Query: 9   HHWKTKSLSLSHLCFTDDLLIFCHGDANSVKVIKLCLDLFSSLSGLHINDSKSMCFLSNV 188
           +H K K LSL+HLCF DDL++F  G   SV+ +      F+  SGLHI+  KS  +L+ V
Sbjct: 262 YHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGV 321

Query: 189 SPDHAEVIFNFLGFQVGRFPAKFLGVPLITSKLSLADCHPLL 314
           S  +   I +   F  G+ P ++LG+PL+T +++ AD  PLL
Sbjct: 322 SELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLL 363



 Score = 58.2 bits (139), Expect(2) = 2e-25
 Identities = 24/54 (44%), Positives = 36/54 (66%)
 Frame = +1

Query: 337 WTNKFLSYAGRL*LIKSVVFAIQSYWSAHFILPASVFKDLKSTMSRFLWKGPSM 498
           WT + LSYAGRL LI SV+ ++ ++W + + LPA   K+++   S FLW GP +
Sbjct: 373 WTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPEL 426


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score = 79.3 bits (194), Expect(2) = 2e-25
 Identities = 41/109 (37%), Positives = 63/109 (57%)
 Frame = +3

Query: 3   FKHHWKTKSLSLSHLCFTDDLLIFCHGDANSVKVIKLCLDLFSSLSGLHINDSKSMCFLS 182
           F  H K K+L L+HLCF DDL+I   G   SV  I   ++LF+  SGL IN  K+  + +
Sbjct: 604 FGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGLKINMEKTTLYTA 663

Query: 183 NVSPDHAEVIFNFLGFQVGRFPAKFLGVPLITSKLSLADCHPLLG*IQN 329
            VS  +  ++ +   F + + P ++LG+PL+T +L+  D  PL   I+N
Sbjct: 664 GVSDHNRHMMISRYPFGLAQLPVRYLGLPLVTKRLTKEDLSPLFEQIRN 712



 Score = 61.2 bits (147), Expect(2) = 2e-25
 Identities = 26/60 (43%), Positives = 42/60 (70%)
 Frame = +1

Query: 337 WTNKFLSYAGRL*LIKSVVFAIQSYWSAHFILPASVFKDLKSTMSRFLWKGPSMLKFGAK 516
           WT+++LS+AGRL LI SV+++  ++W + F LP++  K++ S  S FLW GP + +  AK
Sbjct: 717 WTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELNRRKAK 776


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 81.6 bits (200), Expect(2) = 4e-25
 Identities = 42/102 (41%), Positives = 61/102 (59%)
 Frame = +3

Query: 9    HHWKTKSLSLSHLCFTDDLLIFCHGDANSVKVIKLCLDLFSSLSGLHINDSKSMCFLSNV 188
            +H K K LSL+HLCF DDL++F  G   SV+ +      F+  SGLHI+  KS  +L+ V
Sbjct: 831  YHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLYLAEV 890

Query: 189  SPDHAEVIFNFLGFQVGRFPAKFLGVPLITSKLSLADCHPLL 314
            S  +   I +   F  G+ P ++LG PL+T +++ AD  PLL
Sbjct: 891  SELNRNNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLL 932



 Score = 58.2 bits (139), Expect(2) = 4e-25
 Identities = 24/54 (44%), Positives = 36/54 (66%)
 Frame = +1

Query: 337  WTNKFLSYAGRL*LIKSVVFAIQSYWSAHFILPASVFKDLKSTMSRFLWKGPSM 498
            WT + LSYAGRL LI SV+ ++ ++W + + LPA   K+++   S FLW GP +
Sbjct: 942  WTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPEL 995


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