BLASTX nr result

ID: Panax21_contig00026585 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00026585
         (709 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310281.1| short internodes 1 [Populus trichocarpa] gi|...   119   6e-25
ref|XP_002533653.1| transcription factor, putative [Ricinus comm...   116   4e-24
ref|XP_002327777.1| short internodes 2 [Populus trichocarpa] gi|...   114   1e-23
ref|XP_004174041.1| PREDICTED: uncharacterized protein LOC101232...   108   8e-22
ref|XP_004173977.1| PREDICTED: uncharacterized protein LOC101224...   108   8e-22

>ref|XP_002310281.1| short internodes 1 [Populus trichocarpa]
           gi|222853184|gb|EEE90731.1| short internodes 1 [Populus
           trichocarpa]
          Length = 229

 Score =  119 bits (298), Expect = 6e-25
 Identities = 76/178 (42%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
 Frame = -3

Query: 515 MAGFFSLGGRGAXXXXXXXXXXXXXXXXXXXXXXSWFLYNRNNPHDQHLPPPYRGFELWX 336
           MAG FSLG RG+                      SWF Y   +        PY+ FELW 
Sbjct: 1   MAGLFSLG-RGSSSSNNQEDQQNNNNPPTEIPQESWFWYKSEDI-------PYKSFELWQ 52

Query: 335 XXXXXXXXXXXXXHNNPLQDFYPXXXXXXXXXXXXVNIIPDERSG-------SFLMMTXX 177
                          NP QD Y                I DE S        +F+MM   
Sbjct: 53  QQHQELLHQRH---QNPQQDLYSPAVGLGVGPSRTSINISDESSSRSAAAAEAFMMMRPG 109

Query: 176 XXXXXXXXGIVNCQDCGNQAKKDCSHMRCRTCCKSRGFQCQTHVKSTWVPASKRRERQ 3
                    I +CQDCGNQAKKDC HMRCRTCCKSRGF+CQTHVKSTWVPASKRRERQ
Sbjct: 110 GSGTGGAGSI-SCQDCGNQAKKDCIHMRCRTCCKSRGFECQTHVKSTWVPASKRRERQ 166


>ref|XP_002533653.1| transcription factor, putative [Ricinus communis]
           gi|223526448|gb|EEF28724.1| transcription factor,
           putative [Ricinus communis]
          Length = 350

 Score =  116 bits (291), Expect = 4e-24
 Identities = 74/177 (41%), Positives = 81/177 (45%), Gaps = 6/177 (3%)
 Frame = -3

Query: 515 MAGFFSLGG---RGAXXXXXXXXXXXXXXXXXXXXXXSWFLYNRNNPHDQHLPPPYRGFE 345
           MAG FSLGG   RG+                      SWF Y   +        PY+GFE
Sbjct: 1   MAGLFSLGGGGGRGSNQEDDQQHNNNPPPPPTEIPQESWFWYKNEDV-------PYKGFE 53

Query: 344 LWXXXXXXXXXXXXXXH-NNPLQDFYPXXXXXXXXXXXXVNIIPDERSG--SFLMMTXXX 174
           LW                    QD Y                  DE S   +F+MM    
Sbjct: 54  LWQQQQQQQQEFFRHQSLQQQQQDLYSSAAGLGVGPSRSSINFSDESSSRSAFMMMRSSS 113

Query: 173 XXXXXXXGIVNCQDCGNQAKKDCSHMRCRTCCKSRGFQCQTHVKSTWVPASKRRERQ 3
                    ++CQDCGNQAKKDC HMRCRTCCKSRGF CQTHVKSTWVPASKRRERQ
Sbjct: 114 GGSS-----MSCQDCGNQAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQ 165


>ref|XP_002327777.1| short internodes 2 [Populus trichocarpa]
           gi|222836862|gb|EEE75255.1| short internodes 2 [Populus
           trichocarpa]
          Length = 344

 Score =  114 bits (286), Expect = 1e-23
 Identities = 65/142 (45%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
 Frame = -3

Query: 410 WFLYNRNNPHDQHLPPPYRGFELWXXXXXXXXXXXXXXHNNPLQDFYPXXXXXXXXXXXX 231
           WF Y   +         Y+GFELW                NP QD Y             
Sbjct: 38  WFCYRSEDNS-------YKGFELWQQHHHHQELLHQRH-QNPQQDLYSSAVGLGVGPSRA 89

Query: 230 VNIIPDERSG------SFLMMTXXXXXXXXXXGIVNCQDCGNQAKKDCSHMRCRTCCKSR 69
              I DE S       +F+MM             ++CQDCGNQAKKDC HMRCRTCCKSR
Sbjct: 90  SINISDESSSRSAAAAAFMMMRPVGSGVGGS---ISCQDCGNQAKKDCVHMRCRTCCKSR 146

Query: 68  GFQCQTHVKSTWVPASKRRERQ 3
           GF+CQTHVKSTWVPASKRRERQ
Sbjct: 147 GFECQTHVKSTWVPASKRRERQ 168


>ref|XP_004174041.1| PREDICTED: uncharacterized protein LOC101232804, partial [Cucumis
           sativus]
          Length = 206

 Score =  108 bits (271), Expect = 8e-22
 Identities = 45/48 (93%), Positives = 48/48 (100%)
 Frame = -3

Query: 146 VNCQDCGNQAKKDCSHMRCRTCCKSRGFQCQTHVKSTWVPASKRRERQ 3
           +NCQDCGNQAKKDCSH+RCRTCCKSRGFQCQTHVKSTWVPA+KRRERQ
Sbjct: 9   MNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQ 56


>ref|XP_004173977.1| PREDICTED: uncharacterized protein LOC101224904, partial [Cucumis
           sativus]
          Length = 191

 Score =  108 bits (271), Expect = 8e-22
 Identities = 45/48 (93%), Positives = 48/48 (100%)
 Frame = -3

Query: 146 VNCQDCGNQAKKDCSHMRCRTCCKSRGFQCQTHVKSTWVPASKRRERQ 3
           +NCQDCGNQAKKDCSH+RCRTCCKSRGFQCQTHVKSTWVPA+KRRERQ
Sbjct: 98  MNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQ 145


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