BLASTX nr result

ID: Panax21_contig00026213 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00026213
         (884 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002318002.1| predicted protein [Populus trichocarpa] gi|2...   168   2e-39
ref|XP_002511495.1| tRNA ligase, putative [Ricinus communis] gi|...   167   3e-39
ref|XP_002266347.1| PREDICTED: uncharacterized protein LOC100243...   162   1e-37
emb|CAN79617.1| hypothetical protein VITISV_004978 [Vitis vinifera]   162   1e-37
emb|CBI15298.3| unnamed protein product [Vitis vinifera]              139   7e-31

>ref|XP_002318002.1| predicted protein [Populus trichocarpa] gi|222858675|gb|EEE96222.1|
           predicted protein [Populus trichocarpa]
          Length = 252

 Score =  168 bits (425), Expect = 2e-39
 Identities = 83/134 (61%), Positives = 110/134 (82%)
 Frame = +3

Query: 3   GLRRSKRATRNRIDYRQLEGSDSETESLKPEESNASDKYTDASENAEFSLRSGSEESERI 182
           GLRRS+RATRN+I+YRQ E S+SETES+K E+SNASD+++DASEN E+S RS S +S+  
Sbjct: 119 GLRRSRRATRNQINYRQYELSESETESIKREKSNASDEHSDASENGEYSARSQSGDSDGN 178

Query: 183 DNNQEMKIEPPVEEQPETVGKEQIQMPKKADSPDQDEVEGVQKRRFLDLNELAPGSGFDD 362
           D+ Q MK++ PVE       +EQ Q P++++SP Q+EVEGV+KRRFLDLNELAPGSGFDD
Sbjct: 179 DDEQNMKVDQPVEGDTVIAREEQNQPPEESNSPVQEEVEGVRKRRFLDLNELAPGSGFDD 238

Query: 363 CPNSMIKDEDTDNF 404
            PN+++KDED ++F
Sbjct: 239 SPNTVMKDEDRNDF 252


>ref|XP_002511495.1| tRNA ligase, putative [Ricinus communis]
           gi|223550610|gb|EEF52097.1| tRNA ligase, putative
           [Ricinus communis]
          Length = 721

 Score =  167 bits (423), Expect = 3e-39
 Identities = 87/135 (64%), Positives = 109/135 (80%), Gaps = 1/135 (0%)
 Frame = +3

Query: 3   GLRRSKRATRNRIDYRQLEGSDSETESLKPEESNASDKYTDASENAEFSLRSGSEESE-R 179
           GLRRSKRATRNRI+YRQ E S+SE ES+KP +SNASD+ TDASENAE+S  +GS++S+  
Sbjct: 589 GLRRSKRATRNRINYRQYELSESEGESMKPAKSNASDENTDASENAEYS--AGSQDSDDN 646

Query: 180 IDNNQEMKIEPPVEEQPETVGKEQIQMPKKADSPDQDEVEGVQKRRFLDLNELAPGSGFD 359
            D  Q+MK++ PVE+      K Q Q P+K++SP QDEVEGV+KRRFLDLNELAPGS FD
Sbjct: 647 DDEEQDMKVDRPVEDYNGATEKVQSQPPEKSNSPGQDEVEGVRKRRFLDLNELAPGSSFD 706

Query: 360 DCPNSMIKDEDTDNF 404
           D PN+++KDED D+F
Sbjct: 707 DGPNTVLKDEDRDDF 721


>ref|XP_002266347.1| PREDICTED: uncharacterized protein LOC100243405 [Vitis vinifera]
          Length = 718

 Score =  162 bits (410), Expect = 1e-37
 Identities = 82/132 (62%), Positives = 107/132 (81%)
 Frame = +3

Query: 3   GLRRSKRATRNRIDYRQLEGSDSETESLKPEESNASDKYTDASENAEFSLRSGSEESERI 182
           GLRRSKRATRNRI+YRQ + S+SETESLK E+SNASD  +D S+  E+S+  GS++S+  
Sbjct: 588 GLRRSKRATRNRINYRQYDLSESETESLKQEKSNASDGRSDESDKVEYSM--GSQDSDDN 645

Query: 183 DNNQEMKIEPPVEEQPETVGKEQIQMPKKADSPDQDEVEGVQKRRFLDLNELAPGSGFDD 362
           D++QE+K++ PVE  P+TV KE  Q  +K++SP QDE EGV+KRRFLDLNELAPGSGFDD
Sbjct: 646 DDDQELKVDQPVENYPQTVEKEINQPSEKSNSPVQDEAEGVRKRRFLDLNELAPGSGFDD 705

Query: 363 CPNSMIKDEDTD 398
            PN+++KD+  D
Sbjct: 706 GPNTILKDDTND 717


>emb|CAN79617.1| hypothetical protein VITISV_004978 [Vitis vinifera]
          Length = 757

 Score =  162 bits (410), Expect = 1e-37
 Identities = 82/132 (62%), Positives = 107/132 (81%)
 Frame = +3

Query: 3    GLRRSKRATRNRIDYRQLEGSDSETESLKPEESNASDKYTDASENAEFSLRSGSEESERI 182
            GLRRSKRATRNRI+YRQ + S+SETESLK E+SNASD  +D S+  E+S+  GS++S+  
Sbjct: 627  GLRRSKRATRNRINYRQYDLSESETESLKQEKSNASDGRSDESDKVEYSM--GSQDSDDN 684

Query: 183  DNNQEMKIEPPVEEQPETVGKEQIQMPKKADSPDQDEVEGVQKRRFLDLNELAPGSGFDD 362
            D++QE+K++ PVE  P+TV KE  Q  +K++SP QDE EGV+KRRFLDLNELAPGSGFDD
Sbjct: 685  DDDQELKVDQPVENYPQTVEKEINQPSEKSNSPVQDEAEGVRKRRFLDLNELAPGSGFDD 744

Query: 363  CPNSMIKDEDTD 398
             PN+++KD+  D
Sbjct: 745  GPNTILKDDTND 756


>emb|CBI15298.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  139 bits (351), Expect = 7e-31
 Identities = 74/132 (56%), Positives = 97/132 (73%)
 Frame = +3

Query: 3   GLRRSKRATRNRIDYRQLEGSDSETESLKPEESNASDKYTDASENAEFSLRSGSEESERI 182
           GLRRSKRATRNRI+YRQ + S+SETESLK E+SNASD  +D S+  E+S+  GS++S+  
Sbjct: 449 GLRRSKRATRNRINYRQYDLSESETESLKQEKSNASDGRSDESDKVEYSM--GSQDSDDN 506

Query: 183 DNNQEMKIEPPVEEQPETVGKEQIQMPKKADSPDQDEVEGVQKRRFLDLNELAPGSGFDD 362
           D++QE+K++ P                 K++SP QDE EGV+KRRFLDLNELAPGSGFDD
Sbjct: 507 DDDQELKVDQP-----------------KSNSPVQDEAEGVRKRRFLDLNELAPGSGFDD 549

Query: 363 CPNSMIKDEDTD 398
            PN+++KD+  D
Sbjct: 550 GPNTILKDDTND 561


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