BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00025794
         (1792 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK29467.1| polyprotein-like [Solanum chilense]                    108   6e-21
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   102   3e-19
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc...    87   1e-14
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc...    87   1e-14
ref|XP_002307225.1| predicted protein [Populus trichocarpa] gi|2...    86   2e-14

>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  108 bits (269), Expect = 6e-21
 Identities = 70/204 (34%), Positives = 106/204 (51%), Gaps = 7/204 (3%)
 Frame = +2

Query: 272 MSGMKIDIEKFDG-RINFGL*QIQVKDVMIQSKLHKALKGRPTPVSSKQDGQPTHDSSKQ 448
           MSG+K ++ KF+G +  F + Q ++KD++IQ  LHKAL G+     S             
Sbjct: 1   MSGVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPES------------- 47

Query: 449 DFAYGMSDEDWEEFDLKVASMIRLSLAKNILTNMQGISKAKELWEKLEEMYRAKGISNRV 628
                M  EDWEE D K AS IRL L  +++ N+     A  +W KLE +Y +K ++N++
Sbjct: 48  -----MKLEDWEELDEKAASAIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKL 102

Query: 629 YLKEQFHTLHMNEGT------XXXXXXXXXXXXTGIHWSKDG**GYSLTWSLPNSYEHMK 790
           YLK+Q +TLHM+EGT                   G+   ++      L  SLP+SY+ + 
Sbjct: 103 YLKKQLYTLHMDEGTNFLSHLNVLNGLITQLANLGVKIEEED-KRIVLLNSLPSSYDTLS 161

Query: 791 PILIHGKEKIAFSEVTSKLSLKRR 862
             ++HGK+ I   +VTS L L  +
Sbjct: 162 TTILHGKDSIQLKDVTSALLLNEK 185


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  102 bits (255), Expect = 3e-19
 Identities = 76/265 (28%), Positives = 117/265 (44%), Gaps = 21/265 (7%)
 Frame = +2

Query: 272  MSGMKIDIEKFDGRINFGL*QIQVKDVMIQSKLHKALKGRPTPVSSKQDGQPTHDSSKQD 451
            MSG+K ++ KF+G   F   Q +++D++IQ  LHK L                 DS K D
Sbjct: 1    MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDV---------------DSKKPD 45

Query: 452  FAYGMSDEDWEEFDLKVASMIRLSLAKNILTNMQGISKAKELWEKLEEMYRAKGISNRVY 631
                M  EDW + D + AS IRL L+ +++ N+     A+ +W +LE +Y +K ++N++Y
Sbjct: 46   T---MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLY 102

Query: 632  LKEQFHTLHMNEGT------XXXXXXXXXXXXTGIHWSKDG**GYSLTWSLPNSYEHMKP 793
            LK+Q + LHM+EGT                   G+   ++      L  SLP+SY+++  
Sbjct: 103  LKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEED-KAILLLNSLPSSYDNLAT 161

Query: 794  ILIHGKEKIAFSEVTSKLSLKRR---------------G*VVDIVFHLKNLALMVAGXXX 928
             ++HGK  I   +VTS L L  +               G          N     A    
Sbjct: 162  TILHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKS 221

Query: 929  XXXXXXXXXICWRCGQSGHLKRNYP 1003
                      C+ C Q GH KR+ P
Sbjct: 222  KNRSKSRVRNCYNCNQPGHFKRDCP 246


>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 424

 Score = 87.4 bits (215), Expect = 1e-14
 Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 11/251 (4%)
 Frame = +2

Query: 284  KIDIEKFDGRINFGL*QIQVKDVMIQSKLHKALKGRPTPVSSKQDGQPTHDSSKQDFAYG 463
            K ++ KFDG  NF L Q+++KD++ Q  + KAL+                    +     
Sbjct: 8    KFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALE--------------------ETMPEK 47

Query: 464  MSDEDWEEFDLKVASMIRLSLAKNILTNMQGISKAKELWEKLEEMYRAKGISNRVYLKEQ 643
            M    WEE   + A+ IRLSL+ +++  +     +KE+W KL  +Y +K +++++YLK+Q
Sbjct: 48   MDAGKWEEMKAQAAATIRLSLSDSVMYQVMDEKTSKEIWVKLTSLYMSKSLTSKLYLKQQ 107

Query: 644  FHTLHMNEGTXXXXXXXXXXXXTGIHWSK------DG**GYSLTWSLPNSYEHMKPILIH 805
             + L M E +              +  SK      D      L  SLP SYEH+  IL H
Sbjct: 108  LYGLQMQEESDLRKHVDVFNQLV-VDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTILTH 166

Query: 806  GKEKIAFSEVTSKLSLK-RRG*VVDIVFHLKNLALMVAG----XXXXXXXXXXXXICWRC 970
            GK+ I    ++S L+   RR    + +   +  +L+V                   C++C
Sbjct: 167  GKDTIKTEIISSLLARDLRRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEKGARCYKC 226

Query: 971  GQSGHLKRNYP 1003
             + GH++RN P
Sbjct: 227  HEFGHIRRNCP 237


>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 425

 Score = 87.0 bits (214), Expect = 1e-14
 Identities = 71/260 (27%), Positives = 116/260 (44%), Gaps = 17/260 (6%)
 Frame = +2

Query: 284  KIDIEKFDGRINFGL*QIQVKDVMIQSKLHKALKGRPTPVSSKQDGQPTHDSSKQDFAYG 463
            K ++ KFDG  NF L Q+++KD++ Q  + KAL+                    +     
Sbjct: 8    KFEVVKFDGTGNFILWQMRLKDLLAQQGISKALE--------------------ETMPEK 47

Query: 464  MSDEDWEEFDLKVASMIRLSLAKNILTNMQGISKAKELWEKLEEMYRAKGISNRVYLKEQ 643
            M    WEE   + A+ IRLSL+ +++  +      KE+W+KL  +Y +K +++++YLK+Q
Sbjct: 48   MDAGKWEEMKAQAAATIRLSLSDSVMYPVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQ 107

Query: 644  FHTLHMNEGTXXXXXXXXXXXXTGIHWSK------DG**GYSLTWSLPNSYEHMKPILIH 805
             + L M E +              +  SK      D      L  SLP SYEH+   L+H
Sbjct: 108  LYGLQMQEESDLRKHVDVFNQLV-VDLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTLMH 166

Query: 806  GKEKIAFSEVTSKLSLK--RRG*VVDIVFHLKNLALMVAG----XXXXXXXXXXXXICWR 967
            GK+ +   E  S L  +  RR    + +   +  +L+V                   C++
Sbjct: 167  GKDTVKTEEKISSLLARDLRRSNKNEAMEASQAESLLVKAKHDHEAGVSKSKDKGARCYK 226

Query: 968  CGQSGHLKRNYP-----KGG 1012
            C + GH++RN P     KGG
Sbjct: 227  CHEFGHIRRNCPLLKKRKGG 246


>ref|XP_002307225.1| predicted protein [Populus trichocarpa] gi|222856674|gb|EEE94221.1|
           predicted protein [Populus trichocarpa]
          Length = 279

 Score = 86.3 bits (212), Expect = 2e-14
 Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 8/216 (3%)
 Frame = +2

Query: 224 DVYPQQLVSKLGSPRK---MSGMKIDIEKFDGRINFGL*QIQVKDVMIQSKLHKALKGRP 394
           D+  ++LV     P +   +S  K ++EKFDG+ NFG+ + +  D+++Q  L   L+ +P
Sbjct: 3   DIPEERLVGNASIPPQYIPVSSTKFEVEKFDGKGNFGMWKCEDMDMLVQINLDFTLEDKP 62

Query: 395 TPVSSKQDGQPTHDSSKQDFAYGMSDEDWEEFDLKVASMIRLSLAKNILTNMQGISKAKE 574
                                  + D+ WE  +    S IRL L K+        + AK+
Sbjct: 63  ED---------------------LDDKSWERINWLACSSIRLCLVKDQKYTFSEQNSAKK 101

Query: 575 LWEKLEEMYRAKGISNRVYLKEQFHTLHMNEGTXXXXXXXXXXXXTGIHWS-----KDG* 739
           LW+ LE+ +  K I NR+YLK++       +GT            T    +      D  
Sbjct: 102 LWQALEDKFMKKSIENRLYLKKRIFRFQHKKGTSMNEHLNDFNKMTADLKNLDVEIDDED 161

Query: 740 *GYSLTWSLPNSYEHMKPILIHGKEKIAFSEVTSKL 847
               L  SLP+ YEH+   L++GKEKI F +V++ L
Sbjct: 162 KALLLLNSLPDIYEHLVTTLLYGKEKIKFIDVSNAL 197