BLASTX nr result

ID: Panax21_contig00025660 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00025660
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512828.1| ubiquinol-cytochrome C reductase iron-sulfur...    74   2e-11
ref|XP_002276466.1| PREDICTED: cytochrome b-c1 complex subunit R...    68   9e-10
gb|AFK46510.1| unknown [Medicago truncatula]                           62   6e-08
ref|XP_003624512.1| Ubiquinol-cytochrome c reductase iron-sulfur...    62   6e-08
ref|XP_004143762.1| PREDICTED: cytochrome b-c1 complex subunit R...    60   2e-07

>ref|XP_002512828.1| ubiquinol-cytochrome C reductase iron-sulfur subunit, putative
           [Ricinus communis] gi|223547839|gb|EEF49331.1|
           ubiquinol-cytochrome C reductase iron-sulfur subunit,
           putative [Ricinus communis]
          Length = 280

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
 Frame = +3

Query: 138 MLRVAGRRLSSVSS----WRPSQTAAASTFSKNPINTAXXXXXXXXXXXXXTAFFSNSFP 305
           MLRVA RRLSS+ S    WRP+Q A ++  S+NPIN                 +F+    
Sbjct: 1   MLRVAARRLSSLCSTQPSWRPNQAATSAIASRNPINGGDSSSSDDVKSKVLNDYFA---- 56

Query: 306 LMHHQFHIPSRGFASDVLISKNNNSIIPDIPATVAA 413
               QFHIP RGF+SD L+ KN + I+ ++PATVAA
Sbjct: 57  -FRPQFHIPHRGFSSDSLMPKNEDGIVSEVPATVAA 91


>ref|XP_002276466.1| PREDICTED: cytochrome b-c1 complex subunit Rieske, mitochondrial
           [Vitis vinifera]
          Length = 274

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 45/96 (46%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
 Frame = +3

Query: 138 MLRVAGRRLSSVSS----WRPSQTAAASTFSKNPINTAXXXXXXXXXXXXXTAFFSNSFP 305
           MLRVA RRLSS++S    WRP+Q A+A   S NPIN                  FS+SF 
Sbjct: 1   MLRVASRRLSSLTSSSSLWRPNQVASAVVTS-NPINPDEQPKPTR---------FSDSFS 50

Query: 306 LMHHQFHIPSRGFASDVLISKNNNSIIPDIPATVAA 413
               QFH+P RGFAS+ L  +N + +IPD P TVAA
Sbjct: 51  FAS-QFHLPFRGFASESLTPRNESGVIPDAPPTVAA 85


>gb|AFK46510.1| unknown [Medicago truncatula]
          Length = 273

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 44/96 (45%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
 Frame = +3

Query: 138 MLRVAGRRLSSVS---SWRPSQTAAASTFSKNPINTAXXXXXXXXXXXXXTAFFSNSFPL 308
           MLRVA ++LSS+S   SWR S  AA+S  SKNPI                T+    S P 
Sbjct: 1   MLRVASKKLSSLSASPSWR-SYHAASSFLSKNPI-----------PPPSSTSDQRRSDPF 48

Query: 309 -MHHQFHIPSRGFASDVLISKNNNSIIPDIPATVAA 413
            +H +F +P RGFA++ LI    NSIIP+IPATV+A
Sbjct: 49  SIHPEFFLPFRGFATESLIHTKENSIIPEIPATVSA 84


>ref|XP_003624512.1| Ubiquinol-cytochrome c reductase iron-sulfur subunit [Medicago
           truncatula] gi|355499527|gb|AES80730.1|
           Ubiquinol-cytochrome c reductase iron-sulfur subunit
           [Medicago truncatula]
          Length = 273

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 44/96 (45%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
 Frame = +3

Query: 138 MLRVAGRRLSSVS---SWRPSQTAAASTFSKNPINTAXXXXXXXXXXXXXTAFFSNSFPL 308
           MLRVA ++LSS+S   SWR S  AA+S  SKNPI                T+    S P 
Sbjct: 1   MLRVASKKLSSLSASPSWR-SYHAASSFLSKNPI-----------PPPSSTSDQRRSDPF 48

Query: 309 -MHHQFHIPSRGFASDVLISKNNNSIIPDIPATVAA 413
            +H +F +P RGFA++ LI    NSIIP+IPATV+A
Sbjct: 49  SIHPEFFLPFRGFATESLIHTKENSIIPEIPATVSA 84


>ref|XP_004143762.1| PREDICTED: cytochrome b-c1 complex subunit Rieske-2,
           mitochondrial-like [Cucumis sativus]
           gi|449516924|ref|XP_004165496.1| PREDICTED: cytochrome
           b-c1 complex subunit Rieske-2, mitochondrial-like
           [Cucumis sativus]
          Length = 274

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
 Frame = +3

Query: 138 MLRVAGRRLSSVSSWRPSQTAAAST-FSKNPINTAXXXXXXXXXXXXXTAFFSNSFPLMH 314
           MLRVA RRLSS+SS     T A+S   S N I++              +A F ++FP+  
Sbjct: 1   MLRVAARRLSSLSSSHFRPTIASSLPLSHNIIDSTDSNDFR-------SAGFFHTFPIRP 53

Query: 315 HQFHIPSRGFASDVLISKNNNSIIPDIPATVAA 413
           H F   SRGFASD L S   N+++PD+PAT+AA
Sbjct: 54  H-FDRNSRGFASDALTSTKENNLVPDVPATIAA 85


Top