BLASTX nr result

ID: Panax21_contig00025472 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00025472
         (395 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003563698.1| PREDICTED: pre-mRNA-processing factor 40 hom...    57   2e-06
gb|EEE54732.1| hypothetical protein OsJ_02081 [Oryza sativa Japo...    56   3e-06
gb|EEC70813.1| hypothetical protein OsI_02277 [Oryza sativa Indi...    56   3e-06
ref|NP_001043246.2| Os01g0532200 [Oryza sativa Japonica Group] g...    56   3e-06

>ref|XP_003563698.1| PREDICTED: pre-mRNA-processing factor 40 homolog A-like [Brachypodium
            distachyon]
          Length = 998

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
 Frame = +2

Query: 224  HGSEDEKEDFKKSRRHGSE--DEKEDLKKSRRNGSDDEKEDLKKSRRHGSDRKKSRKH 391
            HGS+D+K +  K ++H     D  +DL   R     DEK+D KKSRRH SDRKKSRKH
Sbjct: 903  HGSKDKKREKDKEKKHKRRHHDATDDLSSER-----DEKDDSKKSRRHSSDRKKSRKH 955


>gb|EEE54732.1| hypothetical protein OsJ_02081 [Oryza sativa Japonica Group]
          Length = 1002

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
 Frame = +2

Query: 224  HGSEDEKEDFKKSRRHGSE--DEKEDLKKSRRNGSDDEKEDLKKSRRHGSDRKKSRKH 391
            HGS+D+K +  K ++H     D  +D+   R     DEK+D KKSRRH SDRKKSRKH
Sbjct: 907  HGSKDKKREKDKEKKHKRHHHDTADDVSSER-----DEKDDSKKSRRHSSDRKKSRKH 959


>gb|EEC70813.1| hypothetical protein OsI_02277 [Oryza sativa Indica Group]
          Length = 1026

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
 Frame = +2

Query: 224  HGSEDEKEDFKKSRRHGSE--DEKEDLKKSRRNGSDDEKEDLKKSRRHGSDRKKSRKH 391
            HGS+D+K +  K ++H     D  +D+   R     DEK+D KKSRRH SDRKKSRKH
Sbjct: 931  HGSKDKKREKDKEKKHKRHHHDTADDVSSER-----DEKDDSKKSRRHSSDRKKSRKH 983


>ref|NP_001043246.2| Os01g0532200 [Oryza sativa Japonica Group]
           gi|57899764|dbj|BAD87484.1| formin binding protein
           3-like [Oryza sativa Japonica Group]
           gi|255673317|dbj|BAF05160.2| Os01g0532200 [Oryza sativa
           Japonica Group]
          Length = 446

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
 Frame = +2

Query: 224 HGSEDEKEDFKKSRRHGSE--DEKEDLKKSRRNGSDDEKEDLKKSRRHGSDRKKSRKH 391
           HGS+D+K +  K ++H     D  +D+   R     DEK+D KKSRRH SDRKKSRKH
Sbjct: 351 HGSKDKKREKDKEKKHKRHHHDTADDVSSER-----DEKDDSKKSRRHSSDRKKSRKH 403


Top