BLASTX nr result

ID: Panax21_contig00025460 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00025460
         (468 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268657.1| PREDICTED: 50S ribosomal protein L3-2, chlor...   291   5e-77
emb|CAN75145.1| hypothetical protein VITISV_033846 [Vitis vinifera]   290   1e-76
ref|XP_002519326.1| 50S ribosomal protein L3, putative [Ricinus ...   283   1e-74
gb|ABK95213.1| unknown [Populus trichocarpa]                          281   5e-74
ref|XP_002315468.1| predicted protein [Populus trichocarpa] gi|2...   280   9e-74

>ref|XP_002268657.1| PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Vitis
           vinifera] gi|297736812|emb|CBI26013.3| unnamed protein
           product [Vitis vinifera]
          Length = 307

 Score =  291 bits (744), Expect = 5e-77
 Identities = 138/155 (89%), Positives = 146/155 (94%)
 Frame = -3

Query: 466 KRTGVIALKCGMSALWDKWGERVPISVLWLDDNIVTQVKTPEKEEIFALQIGCGHKKEKH 287
           KRTG IA+KCGMSALWDKWG RVPI+VLWLDDNIV+QVKT EKE + ALQ+GCG KK KH
Sbjct: 58  KRTGAIAVKCGMSALWDKWGARVPITVLWLDDNIVSQVKTFEKEGLNALQVGCGQKKAKH 117

Query: 286 LTKPEVGHFRAQGVHMKRKLKEFPVTEDALLPVGTSIGVRHFVPGQYVDVTGITRGKGFQ 107
           LTKPEVGHFRAQGV +KRKL+EFPVTEDALLPVGT+IGVRHFVPGQYVDVTGITRGKGFQ
Sbjct: 118 LTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQYVDVTGITRGKGFQ 177

Query: 106 GGMKRWNFKGMPASHGASLSHRSIGSTGQRDAPGK 2
           GGMKRW FKGMPASHGASLSHRSIGSTGQRDAPGK
Sbjct: 178 GGMKRWGFKGMPASHGASLSHRSIGSTGQRDAPGK 212


>emb|CAN75145.1| hypothetical protein VITISV_033846 [Vitis vinifera]
          Length = 243

 Score =  290 bits (741), Expect = 1e-76
 Identities = 138/155 (89%), Positives = 145/155 (93%)
 Frame = -3

Query: 466 KRTGVIALKCGMSALWDKWGERVPISVLWLDDNIVTQVKTPEKEEIFALQIGCGHKKEKH 287
           KRTG IA+KCGMSALWDKWG RVPI+VLWLDDNIV+QVKT EKE   ALQ+GCG KK KH
Sbjct: 6   KRTGAIAVKCGMSALWDKWGARVPITVLWLDDNIVSQVKTFEKEGXNALQVGCGQKKAKH 65

Query: 286 LTKPEVGHFRAQGVHMKRKLKEFPVTEDALLPVGTSIGVRHFVPGQYVDVTGITRGKGFQ 107
           LTKPEVGHFRAQGV +KRKL+EFPVTEDALLPVGT+IGVRHFVPGQYVDVTGITRGKGFQ
Sbjct: 66  LTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHFVPGQYVDVTGITRGKGFQ 125

Query: 106 GGMKRWNFKGMPASHGASLSHRSIGSTGQRDAPGK 2
           GGMKRW FKGMPASHGASLSHRSIGSTGQRDAPGK
Sbjct: 126 GGMKRWGFKGMPASHGASLSHRSIGSTGQRDAPGK 160


>ref|XP_002519326.1| 50S ribosomal protein L3, putative [Ricinus communis]
           gi|223541641|gb|EEF43190.1| 50S ribosomal protein L3,
           putative [Ricinus communis]
          Length = 311

 Score =  283 bits (724), Expect = 1e-74
 Identities = 134/155 (86%), Positives = 145/155 (93%)
 Frame = -3

Query: 466 KRTGVIALKCGMSALWDKWGERVPISVLWLDDNIVTQVKTPEKEEIFALQIGCGHKKEKH 287
           KRTG+IALKCGM+ALWDKWGERVPI+VLW+DDNIVTQVKT EKE IFALQIG GHKK KH
Sbjct: 64  KRTGIIALKCGMTALWDKWGERVPITVLWVDDNIVTQVKTVEKEGIFALQIGYGHKKAKH 123

Query: 286 LTKPEVGHFRAQGVHMKRKLKEFPVTEDALLPVGTSIGVRHFVPGQYVDVTGITRGKGFQ 107
           LTKPEVGHFRA  V +KRKL+EFPVTEDAL+PVGTS+GVRHFVPGQ+VD+TGITRGKGFQ
Sbjct: 124 LTKPEVGHFRAHNVPLKRKLREFPVTEDALIPVGTSLGVRHFVPGQFVDITGITRGKGFQ 183

Query: 106 GGMKRWNFKGMPASHGASLSHRSIGSTGQRDAPGK 2
           GGMKR  FKGMPA+HGASLSHRS GSTGQRDAPGK
Sbjct: 184 GGMKRHGFKGMPATHGASLSHRSGGSTGQRDAPGK 218


>gb|ABK95213.1| unknown [Populus trichocarpa]
          Length = 315

 Score =  281 bits (718), Expect = 5e-74
 Identities = 132/155 (85%), Positives = 143/155 (92%)
 Frame = -3

Query: 466 KRTGVIALKCGMSALWDKWGERVPISVLWLDDNIVTQVKTPEKEEIFALQIGCGHKKEKH 287
           KRTGV+A+KCGM+ALWDKWG R+PI+VLW+DDNIV+QVKT EKE  FALQ+GCG KKEKH
Sbjct: 68  KRTGVVAVKCGMTALWDKWGARIPITVLWVDDNIVSQVKTVEKEGFFALQVGCGQKKEKH 127

Query: 286 LTKPEVGHFRAQGVHMKRKLKEFPVTEDALLPVGTSIGVRHFVPGQYVDVTGITRGKGFQ 107
           LTKPEVGHFRAQGV MKRKL+EFPVTEDALLPVGT +GVRHFVPGQ+VDV GIT GKGFQ
Sbjct: 128 LTKPEVGHFRAQGVPMKRKLREFPVTEDALLPVGTYVGVRHFVPGQFVDVAGITMGKGFQ 187

Query: 106 GGMKRWNFKGMPASHGASLSHRSIGSTGQRDAPGK 2
           GGMKR  FKG PASHGASLSHRSIGSTGQRDAPGK
Sbjct: 188 GGMKRHGFKGGPASHGASLSHRSIGSTGQRDAPGK 222


>ref|XP_002315468.1| predicted protein [Populus trichocarpa] gi|222864508|gb|EEF01639.1|
           predicted protein [Populus trichocarpa]
          Length = 320

 Score =  280 bits (716), Expect = 9e-74
 Identities = 133/155 (85%), Positives = 143/155 (92%)
 Frame = -3

Query: 466 KRTGVIALKCGMSALWDKWGERVPISVLWLDDNIVTQVKTPEKEEIFALQIGCGHKKEKH 287
           KRTGVIA+KCGM+ALWDKWG R+PI+VLW+DDNIV+QVKT EKE  FALQ+GCG KKEKH
Sbjct: 73  KRTGVIAVKCGMTALWDKWGARIPITVLWVDDNIVSQVKTVEKEGFFALQVGCGQKKEKH 132

Query: 286 LTKPEVGHFRAQGVHMKRKLKEFPVTEDALLPVGTSIGVRHFVPGQYVDVTGITRGKGFQ 107
           LTKPEVGHFRAQGV MKRKL+EFPVTE+ALLPVGT IGVRHFVPGQ+VDV GIT GKGFQ
Sbjct: 133 LTKPEVGHFRAQGVPMKRKLREFPVTENALLPVGTCIGVRHFVPGQFVDVAGITMGKGFQ 192

Query: 106 GGMKRWNFKGMPASHGASLSHRSIGSTGQRDAPGK 2
           GGMKR  FKG PASHGASLSHRSIGSTGQRDAPGK
Sbjct: 193 GGMKRHGFKGGPASHGASLSHRSIGSTGQRDAPGK 227


Top