BLASTX nr result
ID: Panax21_contig00025377
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Panax21_contig00025377 (356 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI17913.3| unnamed protein product [Vitis vinifera] 81 8e-25 ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera] 81 8e-25 ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|2... 72 2e-23 dbj|BAF03051.1| DNA ligase IV [Populus nigra] 72 4e-23 ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max] 74 1e-21 >emb|CBI17913.3| unnamed protein product [Vitis vinifera] Length = 1163 Score = 80.9 bits (198), Expect(2) = 8e-25 Identities = 33/44 (75%), Positives = 39/44 (88%) Frame = -1 Query: 356 QLLNNLDRSEDSKTVDYYKKKYCPNDKWSRFHGCCIYFHLSIQS 225 QLL+N+DRS++SKT+DYYK KYCP +KWSRFH CCI FH SIQS Sbjct: 773 QLLSNVDRSDNSKTIDYYKNKYCPKEKWSRFHDCCICFHSSIQS 816 Score = 57.8 bits (138), Expect(2) = 8e-25 Identities = 28/47 (59%), Positives = 36/47 (76%) Frame = -3 Query: 141 NLDWKALLELAQRRMRLEVFMGGGKVCNSVSDATHLVVLCLRGSNVD 1 N DW+ L +LA RRM+LEV MGGGKV N++S ATHLVV + G ++D Sbjct: 818 NSDWELLSKLALRRMKLEVSMGGGKVGNNLSQATHLVVFSVPGFDLD 864 >ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera] Length = 1162 Score = 80.9 bits (198), Expect(2) = 8e-25 Identities = 33/44 (75%), Positives = 39/44 (88%) Frame = -1 Query: 356 QLLNNLDRSEDSKTVDYYKKKYCPNDKWSRFHGCCIYFHLSIQS 225 QLL+N+DRS++SKT+DYYK KYCP +KWSRFH CCI FH SIQS Sbjct: 772 QLLSNVDRSDNSKTIDYYKNKYCPKEKWSRFHDCCICFHSSIQS 815 Score = 57.8 bits (138), Expect(2) = 8e-25 Identities = 28/47 (59%), Positives = 36/47 (76%) Frame = -3 Query: 141 NLDWKALLELAQRRMRLEVFMGGGKVCNSVSDATHLVVLCLRGSNVD 1 N DW+ L +LA RRM+LEV MGGGKV N++S ATHLVV + G ++D Sbjct: 817 NSDWELLSKLALRRMKLEVSMGGGKVGNNLSQATHLVVFSVPGFDLD 863 >ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|222866696|gb|EEF03827.1| predicted protein [Populus trichocarpa] Length = 1242 Score = 72.0 bits (175), Expect(2) = 2e-23 Identities = 28/47 (59%), Positives = 38/47 (80%) Frame = -1 Query: 356 QLLNNLDRSEDSKTVDYYKKKYCPNDKWSRFHGCCIYFHLSIQS*DP 216 QLL+N++ SED+K +D K+KYCP +KWS FHGCC+YFH+S +S P Sbjct: 781 QLLSNINASEDAKAIDDLKQKYCPEEKWSLFHGCCVYFHISRESLTP 827 Score = 62.0 bits (149), Expect(2) = 2e-23 Identities = 28/45 (62%), Positives = 38/45 (84%) Frame = -3 Query: 135 DWKALLELAQRRMRLEVFMGGGKVCNSVSDATHLVVLCLRGSNVD 1 DW++LL LA RR++LE+FMGGGKV N+++ ATHLVVL + S+VD Sbjct: 828 DWESLLGLAFRRLKLEIFMGGGKVSNNIAHATHLVVLIVPASDVD 872 >dbj|BAF03051.1| DNA ligase IV [Populus nigra] Length = 1319 Score = 71.6 bits (174), Expect(2) = 4e-23 Identities = 28/47 (59%), Positives = 37/47 (78%) Frame = -1 Query: 356 QLLNNLDRSEDSKTVDYYKKKYCPNDKWSRFHGCCIYFHLSIQS*DP 216 QLL+N++ SED K +D K+KYCP +KWS FHGCC+YFH+S +S P Sbjct: 781 QLLSNINASEDGKAIDDLKQKYCPEEKWSLFHGCCVYFHISRESLTP 827 Score = 61.2 bits (147), Expect(2) = 4e-23 Identities = 28/45 (62%), Positives = 38/45 (84%) Frame = -3 Query: 135 DWKALLELAQRRMRLEVFMGGGKVCNSVSDATHLVVLCLRGSNVD 1 DW++LL LA RR++LE+FMGGGKV N+++ ATHLVVL + S+VD Sbjct: 828 DWESLLGLAFRRLKLEIFMGGGKVSNNIAHATHLVVLNVPASDVD 872 >ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max] Length = 1171 Score = 74.3 bits (181), Expect(2) = 1e-21 Identities = 31/44 (70%), Positives = 37/44 (84%) Frame = -1 Query: 356 QLLNNLDRSEDSKTVDYYKKKYCPNDKWSRFHGCCIYFHLSIQS 225 QLL+N+DRSED TVD+Y+KKYCP DKWS F+GC IYFH +I S Sbjct: 772 QLLSNIDRSEDVSTVDHYRKKYCPKDKWSFFYGCSIYFHSAIPS 815 Score = 53.9 bits (128), Expect(2) = 1e-21 Identities = 25/45 (55%), Positives = 34/45 (75%) Frame = -3 Query: 135 DWKALLELAQRRMRLEVFMGGGKVCNSVSDATHLVVLCLRGSNVD 1 DW +L+LA RR++LEV MGGGKV ++++ ATHLVVL + G D Sbjct: 819 DWHFILQLAVRRLKLEVLMGGGKVTSNLTCATHLVVLLVPGYQTD 863