BLASTX nr result

ID: Panax21_contig00025324 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00025324
         (639 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281390.1| PREDICTED: mediator of RNA polymerase II tra...   277   1e-72
ref|XP_002531587.1| Cofactor required for Sp1 transcriptional ac...   271   1e-70
ref|XP_002323352.1| predicted protein [Populus trichocarpa] gi|2...   271   1e-70
ref|XP_004136548.1| PREDICTED: mediator of RNA polymerase II tra...   263   2e-68
dbj|BAF98600.1| CM0545.310.nc [Lotus japonicus]                       261   6e-68

>ref|XP_002281390.1| PREDICTED: mediator of RNA polymerase II transcription subunit 7
           [Vitis vinifera] gi|297739781|emb|CBI29963.3| unnamed
           protein product [Vitis vinifera]
          Length = 168

 Score =  277 bits (709), Expect = 1e-72
 Identities = 142/168 (84%), Positives = 149/168 (88%)
 Frame = -2

Query: 515 MATATYXXXXPFYRLYKDYDHNXXXXXXXXXPIQGTYVLFGANYTTDDALPSLEEQGVRQ 336
           MATATY    P+YRLYKDY  N         PI+GTY LFGA YTTDD LPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYIQNPKSAPEPPPPIEGTYALFGATYTTDDVLPSLEEQGVRQ 60

Query: 335 LYPKGQNVDFKKELRSLNRELQLHILELADILIERPSQYARRVEDISLIFKNLHHLLNSL 156
           LYPKG NVDFKKELRSLNRELQLH+LELAD+L+ERPSQYARRVEDISLIFKNLHHLLNSL
Sbjct: 61  LYPKGSNVDFKKELRSLNRELQLHLLELADVLVERPSQYARRVEDISLIFKNLHHLLNSL 120

Query: 155 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRLLKEALGTLDGQ 12
           RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRLLKEA+GTL+GQ
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRLLKEAVGTLEGQ 168


>ref|XP_002531587.1| Cofactor required for Sp1 transcriptional activation subunit,
           putative [Ricinus communis] gi|223528783|gb|EEF30790.1|
           Cofactor required for Sp1 transcriptional activation
           subunit, putative [Ricinus communis]
          Length = 168

 Score =  271 bits (692), Expect = 1e-70
 Identities = 140/168 (83%), Positives = 146/168 (86%)
 Frame = -2

Query: 515 MATATYXXXXPFYRLYKDYDHNXXXXXXXXXPIQGTYVLFGANYTTDDALPSLEEQGVRQ 336
           MATA Y    P+YRLYKDY  N         PI GTY  FGANYTT+  LPSLEEQGVRQ
Sbjct: 1   MATAAYPPPPPYYRLYKDYIENPKSAPEPPPPIDGTYTCFGANYTTEYVLPSLEEQGVRQ 60

Query: 335 LYPKGQNVDFKKELRSLNRELQLHILELADILIERPSQYARRVEDISLIFKNLHHLLNSL 156
           LYPKG NVDFKKELRSLNRELQLHILEL+D+L+ERPSQYARRVEDISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNVDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120

Query: 155 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRLLKEALGTLDGQ 12
           RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQ+LLKEALGTLDGQ
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQKLLKEALGTLDGQ 168


>ref|XP_002323352.1| predicted protein [Populus trichocarpa] gi|222867982|gb|EEF05113.1|
           predicted protein [Populus trichocarpa]
          Length = 168

 Score =  271 bits (692), Expect = 1e-70
 Identities = 140/168 (83%), Positives = 148/168 (88%)
 Frame = -2

Query: 515 MATATYXXXXPFYRLYKDYDHNXXXXXXXXXPIQGTYVLFGANYTTDDALPSLEEQGVRQ 336
           MATAT+    PFYRLYKDY  N         PI+GTYV F ++YTTDD LPSLEEQGVRQ
Sbjct: 1   MATATFPPPPPFYRLYKDYIENPKSAPEPPPPIEGTYVCFASSYTTDDVLPSLEEQGVRQ 60

Query: 335 LYPKGQNVDFKKELRSLNRELQLHILELADILIERPSQYARRVEDISLIFKNLHHLLNSL 156
           LYPKG NVDFKKELRSLNRELQLHILELAD+L+ERPSQYARRVEDISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEDISLIFKNLHHLLNSL 120

Query: 155 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRLLKEALGTLDGQ 12
           RPHQARATLIHILELQIQRRKQAVEDIKR+REEAQ+LLKEALGTL GQ
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRQREEAQKLLKEALGTLAGQ 168


>ref|XP_004136548.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           7b-like [Cucumis sativus]
          Length = 168

 Score =  263 bits (673), Expect = 2e-68
 Identities = 135/167 (80%), Positives = 147/167 (88%)
 Frame = -2

Query: 515 MATATYXXXXPFYRLYKDYDHNXXXXXXXXXPIQGTYVLFGANYTTDDALPSLEEQGVRQ 336
           MATATY    PFY+LYKDY  +         PI+GTY+ FG+NYTTDD LPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 335 LYPKGQNVDFKKELRSLNRELQLHILELADILIERPSQYARRVEDISLIFKNLHHLLNSL 156
           LYP+G NVD+KKELRSLNRELQLHILELADIL+ERPSQYARRVE+ISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 155 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRLLKEALGTLDG 15
           RPHQARATLIHILELQI+RR+QAVEDIKRRREEAQRLL E+L TLDG
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 167


>dbj|BAF98600.1| CM0545.310.nc [Lotus japonicus]
          Length = 168

 Score =  261 bits (668), Expect = 6e-68
 Identities = 137/168 (81%), Positives = 143/168 (85%)
 Frame = -2

Query: 515 MATATYXXXXPFYRLYKDYDHNXXXXXXXXXPIQGTYVLFGANYTTDDALPSLEEQGVRQ 336
           MATATY    P+YRLYKDY  N         PI+GTYV FGANYTT D LPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYLQNPDSAPEPPPPIEGTYVCFGANYTTSDVLPSLEEQGVRQ 60

Query: 335 LYPKGQNVDFKKELRSLNRELQLHILELADILIERPSQYARRVEDISLIFKNLHHLLNSL 156
           LY KG N+DFKKELRSLN ELQLHILELADILIERPSQYARRVE+IS +FKNLHHLLNSL
Sbjct: 61  LYSKGPNIDFKKELRSLNAELQLHILELADILIERPSQYARRVEEISTVFKNLHHLLNSL 120

Query: 155 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRLLKEALGTLDGQ 12
           RPHQARATLIHILELQIQRRKQAVEDIKRRREEA+ LLKEAL  LDGQ
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEARSLLKEALTILDGQ 168


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