BLASTX nr result

ID: Panax21_contig00024443 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00024443
         (664 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279202.2| PREDICTED: zinc finger CCCH domain-containin...    60   4e-07
gb|ADE74631.1| unknown [Vitis vinifera]                                60   4e-07
emb|CBI24886.3| unnamed protein product [Vitis vinifera]               60   4e-07
ref|XP_003542851.1| PREDICTED: zinc finger CCCH domain-containin...    57   4e-06
ref|XP_003540529.1| PREDICTED: zinc finger CCCH domain-containin...    57   4e-06

>ref|XP_002279202.2| PREDICTED: zinc finger CCCH domain-containing protein 30 [Vitis
           vinifera]
          Length = 740

 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 32/47 (68%), Positives = 36/47 (76%), Gaps = 8/47 (17%)
 Frame = -3

Query: 662 VSSAAPSGEGLKSTSQVES--------VDHSVLGAWLEQMQLDQLVV 546
           VS++A SGEGL S SQ+ES        VDHSV+GAWLEQMQLDQLVV
Sbjct: 694 VSASASSGEGLNSNSQIESNSNSQIDSVDHSVIGAWLEQMQLDQLVV 740


>gb|ADE74631.1| unknown [Vitis vinifera]
          Length = 740

 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 32/47 (68%), Positives = 36/47 (76%), Gaps = 8/47 (17%)
 Frame = -3

Query: 662 VSSAAPSGEGLKSTSQVES--------VDHSVLGAWLEQMQLDQLVV 546
           VS++A SGEGL S SQ+ES        VDHSV+GAWLEQMQLDQLVV
Sbjct: 694 VSASASSGEGLNSNSQIESNSNSQIDSVDHSVIGAWLEQMQLDQLVV 740


>emb|CBI24886.3| unnamed protein product [Vitis vinifera]
          Length = 518

 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 32/47 (68%), Positives = 36/47 (76%), Gaps = 8/47 (17%)
 Frame = -3

Query: 662 VSSAAPSGEGLKSTSQVES--------VDHSVLGAWLEQMQLDQLVV 546
           VS++A SGEGL S SQ+ES        VDHSV+GAWLEQMQLDQLVV
Sbjct: 472 VSASASSGEGLNSNSQIESNSNSQIDSVDHSVIGAWLEQMQLDQLVV 518


>ref|XP_003542851.1| PREDICTED: zinc finger CCCH domain-containing protein 30-like
           isoform 1 [Glycine max] gi|356548931|ref|XP_003542852.1|
           PREDICTED: zinc finger CCCH domain-containing protein
           30-like isoform 2 [Glycine max]
          Length = 701

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = -3

Query: 644 SGEGLKSTSQVESVDHSVLGAWLEQMQLDQLVV 546
           S +G  S SQ+ES+DHSVLGAWLEQMQLDQLVV
Sbjct: 669 SADGPNSNSQIESIDHSVLGAWLEQMQLDQLVV 701


>ref|XP_003540529.1| PREDICTED: zinc finger CCCH domain-containing protein 30-like
           [Glycine max]
          Length = 704

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = -3

Query: 644 SGEGLKSTSQVESVDHSVLGAWLEQMQLDQLVV 546
           S +G  S SQ+ES+DHSVLGAWLEQMQLDQLVV
Sbjct: 672 SADGPNSNSQIESIDHSVLGAWLEQMQLDQLVV 704


Top