BLASTX nr result

ID: Panax21_contig00024413 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00024413
         (1295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308615.1| predicted protein [Populus trichocarpa] gi|2...    60   9e-07
emb|CBI20884.3| unnamed protein product [Vitis vinifera]               59   3e-06
ref|XP_002284115.1| PREDICTED: eukaryotic translation initiation...    59   3e-06
ref|XP_003636390.1| Eukaryotic translation initiation factor 3 s...    58   6e-06
ref|XP_004136214.1| PREDICTED: eukaryotic translation initiation...    57   8e-06

>ref|XP_002308615.1| predicted protein [Populus trichocarpa] gi|222854591|gb|EEE92138.1|
           predicted protein [Populus trichocarpa]
          Length = 466

 Score = 60.5 bits (145), Expect = 9e-07
 Identities = 57/171 (33%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
 Frame = -2

Query: 481 KAYVVAAKLYNQISKPTQNG----EICISLMTRWWF-EPTGNTQLDTSATEK-AXXXXXX 320
           K Y   +  Y QI K  +       IC+SL  +    + T N QL     EK A      
Sbjct: 253 KQYHQKSPQYEQILKKNEQMYALLAICLSLCPQVKLVDETVNAQLREKYGEKMARMQRYD 312

Query: 319 XXXGSLKHEDCPLIMKTIVKYGSPTFSEAKEFLVLQIHDDSHILLLELFFYKRKWHQLLF 140
               SL  E         +   +P+F E     ++  + D++ L L+LF Y+ K  QLL 
Sbjct: 313 DEAFSLYDELFSYACPKFITPSAPSFEEP----LVNYNQDAYRLQLKLFLYEVKQQQLLS 368

Query: 139 GVQNFLKVHSTISLGKLATYKE-------------------VNLEGKVISN 44
           GV+ FLKV+STISLGKLA Y E                   V+ EGK+ISN
Sbjct: 369 GVRTFLKVYSTISLGKLANYMEVDEPTLRTILMTYKHKTHAVDSEGKIISN 419


>emb|CBI20884.3| unnamed protein product [Vitis vinifera]
          Length = 378

 Score = 58.9 bits (141), Expect = 3e-06
 Identities = 58/186 (31%), Positives = 84/186 (45%), Gaps = 1/186 (0%)
 Frame = -2

Query: 622 GMPNVGYIIWVLGIGRLSKSKSYIENTVKFRDKVCNYFFSDQIGKEYKAYVVAAKLYNQI 443
           G  N+    +V  I   +K   YI  T +F  K   Y     + K  + Y + A      
Sbjct: 138 GFANLMLRRYVEAIREFNKILLYIYKTKQFHQKSPQY--EQILKKNEQMYALLA------ 189

Query: 442 SKPTQNGEICISLMTRWWF-EPTGNTQLDTSATEKAXXXXXXXXXGSLKHEDCPLIMKTI 266
                   IC+SL  +    E T  +QL     EK              +++  L     
Sbjct: 190 --------ICLSLCPQEQLVEETVQSQLKEKYGEKMNRMQRYDDEAFALYDE--LFSYAC 239

Query: 265 VKYGSPTFSEAKEFLVLQIHDDSHILLLELFFYKRKWHQLLFGVQNFLKVHSTISLGKLA 86
            K+ +P+    +E LV   + +++ L L+LF Y+ K  QLL GV+ FLKV+STISLGKLA
Sbjct: 240 PKFITPSAPVYEEPLV-NYNQEAYRLQLKLFLYEVKQQQLLSGVRTFLKVYSTISLGKLA 298

Query: 85  TYKEVN 68
           TY EV+
Sbjct: 299 TYMEVD 304


>ref|XP_002284115.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           L-like [Vitis vinifera]
          Length = 517

 Score = 58.9 bits (141), Expect = 3e-06
 Identities = 58/186 (31%), Positives = 84/186 (45%), Gaps = 1/186 (0%)
 Frame = -2

Query: 622 GMPNVGYIIWVLGIGRLSKSKSYIENTVKFRDKVCNYFFSDQIGKEYKAYVVAAKLYNQI 443
           G  N+    +V  I   +K   YI  T +F  K   Y     + K  + Y + A      
Sbjct: 277 GFANLMLRRYVEAIREFNKILLYIYKTKQFHQKSPQY--EQILKKNEQMYALLA------ 328

Query: 442 SKPTQNGEICISLMTRWWF-EPTGNTQLDTSATEKAXXXXXXXXXGSLKHEDCPLIMKTI 266
                   IC+SL  +    E T  +QL     EK              +++  L     
Sbjct: 329 --------ICLSLCPQEQLVEETVQSQLKEKYGEKMNRMQRYDDEAFALYDE--LFSYAC 378

Query: 265 VKYGSPTFSEAKEFLVLQIHDDSHILLLELFFYKRKWHQLLFGVQNFLKVHSTISLGKLA 86
            K+ +P+    +E LV   + +++ L L+LF Y+ K  QLL GV+ FLKV+STISLGKLA
Sbjct: 379 PKFITPSAPVYEEPLV-NYNQEAYRLQLKLFLYEVKQQQLLSGVRTFLKVYSTISLGKLA 437

Query: 85  TYKEVN 68
           TY EV+
Sbjct: 438 TYMEVD 443


>ref|XP_003636390.1| Eukaryotic translation initiation factor 3 subunit L [Medicago
           truncatula] gi|355502325|gb|AES83528.1| Eukaryotic
           translation initiation factor 3 subunit L [Medicago
           truncatula]
          Length = 511

 Score = 57.8 bits (138), Expect = 6e-06
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 5/170 (2%)
 Frame = -2

Query: 562 KSYIENTVKFRDKVCNYFFSDQIGKEYKAYVVAAKLYNQISKPTQNG----EICISLMTR 395
           + Y++   +F +K+  Y F      +YK Y   +  Y QI K  +       I +SL  +
Sbjct: 278 RRYVDAIREF-NKILLYIF------KYKVYHQKSPQYEQILKKNEQMYALLAISLSLCPQ 330

Query: 394 WWF-EPTGNTQLDTSATEKAXXXXXXXXXGSLKHEDCPLIMKTIVKYGSPTFSEAKEFLV 218
               + T N+QL     EK              +++  L      K+ +P+    +E LV
Sbjct: 331 SRLVDETVNSQLREKYGEKMSRMQRYDDEAFAMYDE--LFSYACPKFITPSAPSFEEPLV 388

Query: 217 LQIHDDSHILLLELFFYKRKWHQLLFGVQNFLKVHSTISLGKLATYKEVN 68
              + D++ L L+LF Y+ K  QLL G++ FLKV+STISL KLA+Y EV+
Sbjct: 389 -NYNQDAYRLQLKLFLYEAKQQQLLSGLRTFLKVYSTISLAKLASYMEVD 437


>ref|XP_004136214.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           L-like [Cucumis sativus]
           gi|449508023|ref|XP_004163195.1| PREDICTED: eukaryotic
           translation initiation factor 3 subunit L-like [Cucumis
           sativus]
          Length = 528

 Score = 57.4 bits (137), Expect = 8e-06
 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
 Frame = -2

Query: 481 KAYVVAAKLYNQISKPTQNG----EICISLMTRWWF-EPTGNTQLDTSATEKAXXXXXXX 317
           K Y   +  Y QI K  +       IC+SL  +    + T N+QL     EK        
Sbjct: 315 KQYHQKSPQYEQILKKNEQMYALLAICVSLCPQGKLVDETVNSQLREKYGEKMIRMQRYD 374

Query: 316 XXGSLKHEDCPLIMKTIVKYGSPTFSEAKEFLVLQIHDDSHILLLELFFYKRKWHQLLFG 137
                 +++  L      K+ +P+    +E LV   + D++ L L+LF Y+ K  QLL G
Sbjct: 375 EEAFAIYDE--LFSYACPKFITPSAPSFEEPLV-NYNQDAYRLQLKLFLYEVKQQQLLSG 431

Query: 136 VQNFLKVHSTISLGKLATYKEVN 68
           V+ FLKV+STISLG+LA Y EV+
Sbjct: 432 VRTFLKVYSTISLGQLAIYMEVD 454


Top