BLASTX nr result

ID: Panax21_contig00024386 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00024386
         (616 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81071.1| hypothetical protein VITISV_001976 [Vitis vinifera]   114   1e-23
ref|XP_002328647.1| predicted protein [Populus trichocarpa] gi|2...    69   5e-10

>emb|CAN81071.1| hypothetical protein VITISV_001976 [Vitis vinifera]
          Length = 1863

 Score =  114 bits (285), Expect = 1e-23
 Identities = 73/193 (37%), Positives = 104/193 (53%), Gaps = 2/193 (1%)
 Frame = -2

Query: 615  SNQATSERGDKGHIKXXXXXXXXXXXXSHERSQGEFKNNRNVFPRQTSHEASVRKTQGK- 439
            ++  + E GDK                S E SQGE +NNR+V   QT  EA      G  
Sbjct: 1032 NSHTSPEIGDKSRAWLASTASVQSLPPSREASQGELRNNRSVTQGQTGKEAPQPNIGGSF 1091

Query: 438  SSAFNSGFPYSRSQLQNQLIAGAREQGSMSQSIDVRFDKHAIPPKQTVDSFITL-TGQSA 262
            S+AF  GFPYSRS LQNQ +  A  Q +  QS++  FD+ A   ++  DS+  + T QSA
Sbjct: 1092 STAFTPGFPYSRSPLQNQHMTVASGQVTSDQSVNASFDRFAACSRKVDDSYDRIPTSQSA 1151

Query: 261  EASFPNTACSVPYDNINSYANISRPTATNYSHERAPAEKISPGEVVSVSQPFTATSMSQQ 82
             A   + A + PY+NI S +++SR +++N  H R   ++    E V VS+P  ++  S Q
Sbjct: 1152 TAPLSDLAANAPYNNIASMSDMSRLSSSNQLHVRGSTQQTPVLEAVPVSRPSFSSGTSHQ 1211

Query: 81   GAFSKMLPNIWTN 43
              FSK +PN+WTN
Sbjct: 1212 DGFSK-VPNVWTN 1223


>ref|XP_002328647.1| predicted protein [Populus trichocarpa] gi|222838823|gb|EEE77174.1|
            predicted protein [Populus trichocarpa]
          Length = 1391

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
 Frame = -2

Query: 615  SNQATSERGDKGHIKXXXXXXXXXXXXSHERSQGEFKNNRNVFPRQTSHEASVRKTQGK- 439
            S Q  S  G+KG               S + S G     RN  P    H  +    QGK 
Sbjct: 612  STQVISNTGEKGRALLAPTSSVQSLPPSRDTSHGHL---RNTTPGTLVHAGN--SAQGKF 666

Query: 438  SSAFNSGFPYSRSQLQNQLIAGAREQGSMSQSIDVRFDKHAIPPKQTVDSFIT-LTGQSA 262
            S+AF  GFPYS+S L NQ +     + +  +S++  FD+ +  PK T +SF      QSA
Sbjct: 667  STAFPPGFPYSKSHLPNQHMPDTGGRATACESVNESFDRFSSQPKHTEESFERGQLNQSA 726

Query: 261  EASFPNTACSVPYDNINSYANISRPTATNYSHERAPAEKISPGEVVSVSQPFTATSMSQQ 82
                P+T+    +++  S   + +P + + +H R  A++    E     Q + +   SQ 
Sbjct: 727  GPLVPDTSRHTSHNDFASSTEMPQP-SDDQNHARDSAQQFPVLEASPAPQRYAS---SQD 782

Query: 81   GAFSKMLPNIWTN 43
            G  SKM P +WT+
Sbjct: 783  GFSSKMPPTLWTS 795


Top