BLASTX nr result

ID: Panax21_contig00024285 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00024285
         (1045 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN62265.1| hypothetical protein VITISV_018459 [Vitis vinifera]   261   3e-67
ref|XP_003635376.1| PREDICTED: uncharacterized protein LOC100853...   260   3e-67
ref|XP_002320668.1| predicted protein [Populus trichocarpa] gi|2...   237   4e-60
gb|ADL36701.1| GRF domain class transcription factor [Malus x do...   219   1e-54
ref|XP_002283504.2| PREDICTED: uncharacterized protein LOC100260...   212   1e-52

>emb|CAN62265.1| hypothetical protein VITISV_018459 [Vitis vinifera]
          Length = 497

 Score =  261 bits (666), Expect = 3e-67
 Identities = 141/261 (54%), Positives = 174/261 (66%), Gaps = 9/261 (3%)
 Frame = -1

Query: 1045 MISPIINLKSKDDPFSIPKQHVPIGGSSQPEFSIDYSASLIYPSDKSSYSNPRNCESFLS 866
            MISP I+LKS+D PFSI K  +P   S Q EF    S SL+ PS++ SY N RN   FL 
Sbjct: 237  MISPTIDLKSRDTPFSISKLPIPFEESPQSEFGFVSSDSLLNPSERGSYMNSRNYTPFLD 296

Query: 865  FNDQETHHKQPLRHFMNDLPKNQSDRPTVSWPEEFKSDWTRLSMSIPMASCDFSSCLNSP 686
            F+DQET  + P R F++D PK+QS+R  ++WPEE KSDWT+LS+SIPM+S DFSS  +SP
Sbjct: 297  FSDQETQDQHPFRQFIDDWPKDQSNRSDIAWPEELKSDWTQLSISIPMSSSDFSSSSSSP 356

Query: 685  RQEKFTLMPL---SELDSINMSLGASND---PIKKPTNWIPVAWGNSMGGPLGEALNSIP 524
             QEK    PL    ELD + M LG S+D   P +K TNWIP++WG+SMGGPLGE L +  
Sbjct: 357  TQEKLAFSPLRLSRELDPVQMGLGVSSDLSAPTQKQTNWIPISWGSSMGGPLGEVLTTSA 416

Query: 523  TSVEANKSSSVLNLMTEAWDGRPQLGSSPTGVLQKATFXXXXXXXXXXSPGADYK---AS 353
             ++ A K+SS LNLMTE WDG PQ+GSSPTGVLQKATF          SP  + K     
Sbjct: 417  NNMGACKNSSALNLMTEGWDGSPQIGSSPTGVLQKATFGSLSNSSSGSSPTTENKKIHER 476

Query: 352  GSLPDDVPCSTLASSVSIPSL 290
             S  +D+  STLA+S SIPSL
Sbjct: 477  ASHCEDMLGSTLATSSSIPSL 497


>ref|XP_003635376.1| PREDICTED: uncharacterized protein LOC100853530 [Vitis vinifera]
          Length = 597

 Score =  260 bits (665), Expect = 3e-67
 Identities = 140/261 (53%), Positives = 174/261 (66%), Gaps = 9/261 (3%)
 Frame = -1

Query: 1045 MISPIINLKSKDDPFSIPKQHVPIGGSSQPEFSIDYSASLIYPSDKSSYSNPRNCESFLS 866
            MISP ++LKS+D PFSI K  +P   S Q EF    S SL+ PS++ SY N RN   FL 
Sbjct: 337  MISPTVDLKSRDTPFSISKLPIPFEESPQSEFGFVSSDSLLNPSERGSYMNSRNYTPFLD 396

Query: 865  FNDQETHHKQPLRHFMNDLPKNQSDRPTVSWPEEFKSDWTRLSMSIPMASCDFSSCLNSP 686
            F+DQET  + P R F++D PK+QS+R  ++WPEE KSDWT+LS+SIPM+S DFSS  +SP
Sbjct: 397  FSDQETQDQHPFRQFIDDWPKDQSNRSDIAWPEELKSDWTQLSISIPMSSSDFSSSSSSP 456

Query: 685  RQEKFTLMPL---SELDSINMSLGASND---PIKKPTNWIPVAWGNSMGGPLGEALNSIP 524
             QEK    PL    ELD + M LG S+D   P +K TNWIP++WG+SMGGPLGE L +  
Sbjct: 457  TQEKLAFSPLRLSRELDPVQMGLGVSSDLSAPTQKQTNWIPISWGSSMGGPLGEVLTTSA 516

Query: 523  TSVEANKSSSVLNLMTEAWDGRPQLGSSPTGVLQKATFXXXXXXXXXXSPGADYK---AS 353
             ++ A K+SS LNLMTE WDG PQ+GSSPTGVLQKATF          SP  + K     
Sbjct: 517  NNMGACKNSSALNLMTEGWDGSPQIGSSPTGVLQKATFGSLSNSSSGSSPTTENKKIHER 576

Query: 352  GSLPDDVPCSTLASSVSIPSL 290
             S  +D+  STLA+S SIPSL
Sbjct: 577  ASHCEDMLGSTLATSSSIPSL 597


>ref|XP_002320668.1| predicted protein [Populus trichocarpa] gi|222861441|gb|EEE98983.1|
            predicted protein [Populus trichocarpa]
          Length = 607

 Score =  237 bits (604), Expect = 4e-60
 Identities = 132/261 (50%), Positives = 169/261 (64%), Gaps = 9/261 (3%)
 Frame = -1

Query: 1045 MISPIINLKSKDDPFSIPKQHVPIGGSSQPEFSIDYSASLIYPSDKSSYSNPRNCESFLS 866
            M+S  IN KS +  F +PKQ + +   SQ EF    S SL+ PS KSSY N +  ESFL+
Sbjct: 347  MMSSTINRKSDESSFFVPKQDILMEQCSQTEFGFVSSDSLLNPSQKSSYINSKPYESFLN 406

Query: 865  FNDQETHHKQPLRHFMNDLPKNQSDRPTVSWPEEFKSDWTRLSMSIPMASCDFSSCLNSP 686
            FND+E+  + PLR F+++ PK+QS+   +SWPEE KSDWT+LSMSIPMAS DFSS  +SP
Sbjct: 407  FNDEESQDQHPLRQFIDEWPKDQSNCSVISWPEELKSDWTQLSMSIPMASSDFSSSSSSP 466

Query: 685  RQEKFTLMPLS---ELDSINMSLGAS---NDPIKKPTNWIPVAWGNSMGGPLGEALNSIP 524
             QEK  L P+S   E D + M L  S   N+  +K TNWIP++WG S+GGPLGE L +  
Sbjct: 467  TQEKLALSPMSLSCEFDPVQMGLRVSVDHNESSQKQTNWIPISWGTSIGGPLGEVLTTST 526

Query: 523  TSVEANKSSSVLNLMTEAWDGRPQLGSSPTGVLQKATFXXXXXXXXXXSPGADYKA---S 353
            +  ++ KSSS L+L+ E  DG PQLGSSPTGVLQK+TF          SP A+ K    +
Sbjct: 527  SHADSCKSSSALSLLREGCDGSPQLGSSPTGVLQKSTFCSLSNSSSGSSPRAESKKNNDT 586

Query: 352  GSLPDDVPCSTLASSVSIPSL 290
             SL +DV  S +ASS  IP L
Sbjct: 587  ASLYEDVGGSIIASSSPIPPL 607


>gb|ADL36701.1| GRF domain class transcription factor [Malus x domestica]
          Length = 600

 Score =  219 bits (557), Expect = 1e-54
 Identities = 131/264 (49%), Positives = 162/264 (61%), Gaps = 12/264 (4%)
 Frame = -1

Query: 1045 MISPIINLKSKDDPFSIPKQHVPIGGSSQPEFSIDYSASLIYPSDKSSYSNPRNCESFLS 866
            M +P +  KS +    + KQ   +  SSQ EF I  + SL+ PS ++SY +     SFL 
Sbjct: 338  MSAPTLKPKSNNSTSKLGKQEFLVEESSQSEFGIVSTYSLLNPSHRNSYISKDFGGSFLD 397

Query: 865  FNDQETHHKQPLRHFMNDLPKNQSDRPTVSWPEEFKSDWTRLSMSIPMASCDFSSCLNSP 686
            F+DQET  + PLR FM+D PK+QS     +WPEE KSDWT+LSMSIPMAS +FSS  +SP
Sbjct: 398  FSDQETQDQHPLRQFMDDWPKDQSSHSVSTWPEEIKSDWTQLSMSIPMASSEFSSSSSSP 457

Query: 685  RQEKFTLMPL---SELDSINMSLGASND---PIKKPTNWIPVAWGNSMGGPLGEALNSIP 524
              EK  L PL    E     M+LG SND    I+K TNWIP+ WGNSMGGPLGE + +  
Sbjct: 458  THEKLALSPLRLSREFVPAQMNLGMSNDLSESIQKQTNWIPIPWGNSMGGPLGEVITNTT 517

Query: 523  TSVE-ANKSSSVLNLMTEAWDGRPQLGSSPTGVLQKATFXXXXXXXXXXSP-GADYKAS- 353
            +S +  N S+S LNL+ E WDG  QLGSSPTGVLQK+TF          SP G + K S 
Sbjct: 518  SSGKICNNSTSPLNLLNEGWDGNSQLGSSPTGVLQKSTFCSLSNSSSGSSPRGGEIKKSS 577

Query: 352  ---GSLPDDVPCSTLASSVSIPSL 290
                S+ DDV  ST ASS  +PSL
Sbjct: 578  LDGASIYDDVLGSTFASS-PVPSL 600


>ref|XP_002283504.2| PREDICTED: uncharacterized protein LOC100260890 [Vitis vinifera]
          Length = 604

 Score =  212 bits (539), Expect = 1e-52
 Identities = 125/262 (47%), Positives = 163/262 (62%), Gaps = 10/262 (3%)
 Frame = -1

Query: 1045 MISPIINLKSKDDPFSIPKQHVPIGGSSQPEFSIDYSASLIYPSDKSSYSNPRNCESFLS 866
            ++S  I+ KSK++ FS+PKQ +P   SS+  F +  S SL+  S  SS+ N RN  S   
Sbjct: 345  ILSSTIDQKSKENQFSLPKQQIPYEESSRAGFGLVPSNSLL--SKSSSFMNCRNFGSSQD 402

Query: 865  FNDQETHHKQPLRHFMNDLPKNQSDRPTVSWPE-EFKSDWTRLSMSIPMASCDFSSCLNS 689
             N+ E   +  LRHF++D PKNQSDR  +SWP+ + +SD T+LS+SIPMAS DF S  +S
Sbjct: 403  LNNHEPDSQHSLRHFIDDWPKNQSDRTAISWPDIDLQSDRTQLSISIPMASSDFMSSTSS 462

Query: 688  PRQEKFTLMPLS---ELDSINMSLGAS---NDPIKKPTNWIPVAWGNSMGGPLGEALNSI 527
            P  +K TL PL    E D I M LG     N+P ++  NWIP++W  SMGGPLGE L+S 
Sbjct: 463  PTNDKLTLSPLRLSREFDPIQMGLGVGSVLNEPNQRQANWIPISWETSMGGPLGEVLHST 522

Query: 526  PTSVEANKSSSVLNLMTEAWDGRPQLGSSPTGVLQKATFXXXXXXXXXXSPGADYKAS-- 353
              +    K+SS LNLMTE WDG P+LGSSPTGVLQK +F          SP A  K +  
Sbjct: 523  NNNGGDCKNSSALNLMTEGWDGSPRLGSSPTGVLQKTSFGSLSNSSAGSSPRAGNKKTND 582

Query: 352  -GSLPDDVPCSTLASSVSIPSL 290
              SL +D+  STL +S S+PSL
Sbjct: 583  GASLCNDLLGSTLVNSSSLPSL 604


Top