BLASTX nr result

ID: Panax21_contig00024270 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00024270
         (375 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273353.2| PREDICTED: uncharacterized protein LOC100258...   214   5e-54
ref|XP_003522980.1| PREDICTED: RNA-binding protein 24-like [Glyc...   210   9e-53
ref|XP_004146763.1| PREDICTED: RNA-binding protein Musashi homol...   207   9e-52
ref|XP_003603877.1| RNA-binding protein 24-B [Medicago truncatul...   206   1e-51
ref|XP_003527630.1| PREDICTED: 40S ribosomal protein S19, mitoch...   202   3e-50

>ref|XP_002273353.2| PREDICTED: uncharacterized protein LOC100258188 [Vitis vinifera]
          Length = 346

 Score =  214 bits (546), Expect = 5e-54
 Identities = 97/124 (78%), Positives = 107/124 (86%)
 Frame = +3

Query: 3   FGEILEAVVITDKNTGRSKGYGFVTFRDPESAKRACVDPTPVIDGRRANCNLASLGRSWP 182
           FGEILEAVVITDKNTGRSKGYGFVTFRDPESA+RAC+DP P+IDGRRANCNLASLGR  P
Sbjct: 55  FGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACLDPAPIIDGRRANCNLASLGRPRP 114

Query: 183 ALSFGRFRSALPYPGGMPAARGAYIGGFGYQQPVSYGYQQGLTYPQYGYATYGSEHVYPQ 362
           ++S+GR R   PY G +PA RG+Y+G FGYQQPVSY YQQG  YP YGYA YG E+VYPQ
Sbjct: 115 SMSYGRLRPVTPYLGSVPATRGSYVGNFGYQQPVSYSYQQGFMYPSYGYAAYGPEYVYPQ 174

Query: 363 GVYN 374
           GVYN
Sbjct: 175 GVYN 178


>ref|XP_003522980.1| PREDICTED: RNA-binding protein 24-like [Glycine max]
          Length = 286

 Score =  210 bits (535), Expect = 9e-53
 Identities = 96/124 (77%), Positives = 106/124 (85%)
 Frame = +3

Query: 3   FGEILEAVVITDKNTGRSKGYGFVTFRDPESAKRACVDPTPVIDGRRANCNLASLGRSWP 182
           FGEILEAVVITDKNTGRSKGYGFVTFRDPE+A+RAC DP+PVIDGRRANCNLASLGR  P
Sbjct: 55  FGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASLGRPRP 114

Query: 183 ALSFGRFRSALPYPGGMPAARGAYIGGFGYQQPVSYGYQQGLTYPQYGYATYGSEHVYPQ 362
            L +GR R A PY G +  ARGAY+GGFGYQQPVSY YQQGL YP YGY +YG E++YPQ
Sbjct: 115 PLPYGRIRPASPYVGSLQPARGAYVGGFGYQQPVSYSYQQGLVYPPYGYTSYGPEYIYPQ 174

Query: 363 GVYN 374
            +YN
Sbjct: 175 SLYN 178


>ref|XP_004146763.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Cucumis
           sativus] gi|449531145|ref|XP_004172548.1| PREDICTED:
           RNA-binding protein Musashi homolog 2-like [Cucumis
           sativus]
          Length = 286

 Score =  207 bits (526), Expect = 9e-52
 Identities = 100/126 (79%), Positives = 104/126 (82%), Gaps = 2/126 (1%)
 Frame = +3

Query: 3   FGEILEAVVITDKNTGRSKGYGFVTFRDPESAKRACVDPTPVIDGRRANCNLASLGRSWP 182
           FGEILEAVVITDKNTGRSKGYGFVTFRDPESA+RAC DPTP+IDGRRANCNLASLGR  P
Sbjct: 55  FGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRP 114

Query: 183 ALSF--GRFRSALPYPGGMPAARGAYIGGFGYQQPVSYGYQQGLTYPQYGYATYGSEHVY 356
            LS+  GR R    Y GGM   RG YIG FGYQQPVSY YQQGL YP YGYATYG E+VY
Sbjct: 115 PLSYGTGRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY 174

Query: 357 PQGVYN 374
           PQG YN
Sbjct: 175 PQGGYN 180


>ref|XP_003603877.1| RNA-binding protein 24-B [Medicago truncatula]
           gi|355492925|gb|AES74128.1| RNA-binding protein 24-B
           [Medicago truncatula]
          Length = 371

 Score =  206 bits (525), Expect = 1e-51
 Identities = 95/125 (76%), Positives = 108/125 (86%), Gaps = 1/125 (0%)
 Frame = +3

Query: 3   FGEILEAVVITDKNTGRSKGYGFVTFRDPESAKRACVDPTPVIDGRRANCNLASLGR-SW 179
           FG+ILEAVVITDKNTGRSKGYGFVTFRDPE+A+RAC DP+PVIDGRRANCNLAS GR   
Sbjct: 52  FGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASHGRPRG 111

Query: 180 PALSFGRFRSALPYPGGMPAARGAYIGGFGYQQPVSYGYQQGLTYPQYGYATYGSEHVYP 359
           P +S+GR R A PY G +  ARGAY+GG+GYQQP+SYGYQQG+ YP YGY TYG E+VYP
Sbjct: 112 PPISYGRVRPASPYVGSLQPARGAYVGGYGYQQPLSYGYQQGMVYPPYGYTTYGPEYVYP 171

Query: 360 QGVYN 374
           QG+YN
Sbjct: 172 QGMYN 176


>ref|XP_003527630.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like [Glycine
           max]
          Length = 293

 Score =  202 bits (513), Expect = 3e-50
 Identities = 98/132 (74%), Positives = 106/132 (80%), Gaps = 8/132 (6%)
 Frame = +3

Query: 3   FGEILEAVVITDKNTGRSKGYGFVTFRDPESAKRACVDPTPVIDGRRANCNLASLGRSWP 182
           FGEILEAVVITDKNTGRSKGYGFVTFRDPE+A+RAC DPTPVIDGRRANCNLASLGR  P
Sbjct: 55  FGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRP 114

Query: 183 ALSFG-------RFRSALPYPGGMPAARGAYIGGFGY-QQPVSYGYQQGLTYPQYGYATY 338
            L +G       R R A PY G +  ARGAY+GGFGY QQPVSY YQQGL YP YGY TY
Sbjct: 115 PLPYGIVLCLIRRIRPASPYVGSLQPARGAYVGGFGYQQQPVSYSYQQGLVYPPYGYTTY 174

Query: 339 GSEHVYPQGVYN 374
           G E++YPQ +YN
Sbjct: 175 GPEYIYPQSLYN 186


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