BLASTX nr result
ID: Panax21_contig00024152
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00024152
(2819 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2... 289 3e-75
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 238 3e-68
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 224 6e-67
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 224 6e-64
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 223 1e-63
>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
predicted protein [Populus trichocarpa]
Length = 517
Score = 289 bits (740), Expect = 3e-75
Identities = 169/468 (36%), Positives = 246/468 (52%), Gaps = 10/468 (2%)
Frame = +2
Query: 233 VNILKGCLTKFSSFSGIHINATKSMCYLENVPPDVYVAILTSLDFRVGIYPTKFLGVPLI 412
V +++ LTKF SG++ N KS +L V I+ L FR G P K+LGVPL+
Sbjct: 5 VGMIRTVLTKFQDLSGLYPNPNKSDIFLSGVLNAEREQIIHILGFREGELPMKYLGVPLL 64
Query: 413 TSKLSLADCRPLLDKITSRISS*TNRFLSYSGRLQLLKSVLFVIQSYWLSFFTLPVAALK 592
+S+L C+ L+D+ITS++ T R LSY+GR+QL+ SVLF IQ YW S F LP +K
Sbjct: 65 SSRLKAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIK 124
Query: 593 ELKVTFSTFLWKGPSLSKFGAKVAWSKVSLPFSEGSLGLKKLDLWNKASILLHLWNIINQ 772
++ +FLW G + GAKVAW +V LP EG LG+K + WNK ++L H+WN+ N
Sbjct: 125 NVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCND 184
Query: 773 ASSSLWAKWVRTFTLKGKHFWSMKIPNDCS*IWKKVLIFRPLTLQHISFSIGNGGLTKLW 952
+ S+W+ W+R+ L+G++FW++K P +CS W K+L R L + + IG+G T LW
Sbjct: 185 SDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLW 244
Query: 953 FDPWFSGYPLTSSPTSTLILNSGLGPNALVSSNIIRNSNW---ILSMSNHHAVIEFRQLF 1123
FD W PL S I +SG+ NA V+ +I+NS W H +IE
Sbjct: 245 FDNWHPHSPLADSYGERFIYDSGMAKNAKVNV-LIQNSEWKTPTTQAIGWHPIIE----- 298
Query: 1124 TPALRCDSS----REDCVSWDNYKAPWVSTSSIWKSIRAAGNFVPLDKLVWHSFIPPRYS 1291
A+ +S+ ++D + W + S W+ +R V +VW PR+S
Sbjct: 299 --AIPSNSNPKMGQKDELVWLDSPNHRFSVKVAWEQLRRHRQMVEWHDIVWFKNAVPRHS 356
Query: 1292 FIMCLAFQNGL--RDRLSHFGLGVNPSYQLCNAQNESFNHLFFNCPYSFKLLVSVLRLCG 1465
F++ +A Q L +D+L FG+ LC NE NHLFF C Y+ + V C
Sbjct: 357 FLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRCD 416
Query: 1466 WKGFSKN*AS-ITSFLITCPTAPIHHGILHLGFIVVVFHI*QERNARI 1606
+K I ++ + L F V+H+ QERNARI
Sbjct: 417 IPRMTKGWDEWIRWATVSWHGKSFVNFSCKLSFAATVYHVWQERNARI 464
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 238 bits (606), Expect(2) = 3e-68
Identities = 161/482 (33%), Positives = 246/482 (51%), Gaps = 11/482 (2%)
Frame = +2
Query: 209 FFHGDIRSVNILKGCLTKFSSFSGIHINATKSMCYLENVPPDVYVAILTSLDFRVGIYPT 388
F G +S+ KF++ S + I+ KS ++ + P+ +IL F +G P
Sbjct: 857 FSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPV 916
Query: 389 KFLGVPLITSKLSLADCRPLLDKITSRISS*TNRFLSYSGRLQLLKSVLFVIQSYWLSFF 568
K+LG+PL+T +++ +D PL++KI +RI+S TNRFLS++GRLQL+KSVL I ++WLS F
Sbjct: 917 KYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVF 976
Query: 569 TLPVAALKELKVTFSTFLWKGPSLSKFGAKVAWSKVSLPFSEGSLGLKKLDLWNKASILL 748
LP A L+E++ FS FLW GP L+ AK+AWS+V EG LGLK L N+ S+L
Sbjct: 977 RLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLK 1036
Query: 749 HLWNIINQASSSLWAKWVRTFTLKGKHFWSMKIPNDC-S*IWKKVLIFRPLTLQHISFSI 925
+W I++ A SLW KWV ++ + FWS+K S +W+K+L R +
Sbjct: 1037 LIWRILS-ARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEV 1095
Query: 926 GNGGLTKLWFDPWFSGYPLTSSPTSTLILNSGLGPNALVSSNIIRNSNWILSMSNHHA-- 1099
+G T W D W L S ++ G+ NA V+ + N++ H A
Sbjct: 1096 RSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAE--VMNTH---RRKRHRADF 1150
Query: 1100 VIEFRQLFTPALRCDSSREDCVSW----DNYKAPWVSTSSIWKSIRAAGNFVPLDKLVWH 1267
+ + + A + S+ D W D +K+ + S+S W+ IR+ + VW
Sbjct: 1151 LNQIKSQIELARQDRSTDGDRSLWKQKEDTFKSSF-SSSKTWQQIRSISLRCDWYRGVWF 1209
Query: 1268 SFIPPRYSFIMCLAFQNGL--RDRLSHFGLGVNPSYQLCNAQNESFNHLFFNCPYSFKLL 1441
S P+YSF+ LAF N L D++ + G C + E+ +HLFF+CPYS +
Sbjct: 1210 SASTPKYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVW 1269
Query: 1442 VSVLR--LCGWKGFSKN*ASITSFLITCPTAPIHHGILHLGFIVVVFHI*QERNARIHDR 1615
S+ + L G + N IT L+ +H L F + + +ERN R H
Sbjct: 1270 FSLTKGLLNGRNILNWN--LITPHLLDSSRPYLHVFTLRYAFQASIHSLWRERNCRRHGE 1327
Query: 1616 GA 1621
A
Sbjct: 1328 TA 1329
Score = 50.4 bits (119), Expect(2) = 3e-68
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = +1
Query: 1 VKINGGLYGYFKGQKWLRQGDPLSPYLFVIDVEVLSILISKETVEPNSNF 150
V++NG L G+F+ ++ LRQG LSPYL+VI + VLS ++ K VE ++
Sbjct: 787 VQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISY 836
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 224 bits (570), Expect(3) = 6e-67
Identities = 148/475 (31%), Positives = 230/475 (48%), Gaps = 11/475 (2%)
Frame = +2
Query: 218 GDIRSVNILKGCLTKFSSFSGIHINATKSMCYLENVPPDVYVAILTSLDFRVGIYPTKFL 397
G +RSV+ + + F+ SG+ IN K+ Y V +++ F +G P ++L
Sbjct: 118 GKVRSVDGIVEVMNLFAKRSGLQINMEKTTLYTAGVSDHNRYMMISRYPFGLGQLPVRYL 177
Query: 398 GVPLITSKLSLADCRPLLDKITSRISS*TNRFLSYSGRLQLLKSVLFVIQSYWLSFFTLP 577
G+PL+T +L+ D PL ++I +RI + T+R+LS++GRL L+ SVL+ ++W+S F LP
Sbjct: 178 GLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLP 237
Query: 578 VAALKELKVTFSTFLWKGPSLSKFGAKVAWSKVSLPFSEGSLGLKKLDLWNKASILLHLW 757
A LKE+ S FLW GP L + AKV+W + P EG LGL+ L N S+L +W
Sbjct: 238 SACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVLKLIW 297
Query: 758 NIINQASSSLWAKWVRTFTLKGKHFWSMKIPNDC--S*IWKKVLIFRPLTLQHISFSIGN 931
+ + SLW KW + LK + FWS+ PN S +WKK+L +R + N
Sbjct: 298 RVTSN-DDSLWVKWSKMNLLKQESFWSL-TPNSSLGSWMWKKMLKYRETAKPFSRVEVNN 355
Query: 932 GGLTKLWFDPWFSGYPLTSSPTSTLILNSGLGPNALVS---SNIIRNSNWILSMSNHHAV 1102
G T WFD W L ++ G+ N V+ SN R + +++ A
Sbjct: 356 GARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAEAWSNRRRRKHRTEQLNDIEAA 415
Query: 1103 IEFRQLFTPALRCDSSREDCVSW----DNYKAPWVSTSSIWKSIRAAGNFVPLDKLVWHS 1270
+ + L RED W D +K + ST W +R N V K VW S
Sbjct: 416 LNQKYQTRNLL-----REDATLWRGKGDVFKTSF-STKDTWNQVRKKSNEVAWYKGVWFS 469
Query: 1271 FIPPRYSFIMCLAFQNGLRD--RLSHFGLGVNPSYQLCNAQNESFNHLFFNCPYSFKLLV 1444
P+Y F LA +N L R+ + G + C+ E+ +HLFF+C Y+ +
Sbjct: 470 HSTPKYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYASAIWT 529
Query: 1445 SVLRLCGWKGFSKN*ASITSFLITCPTAPIHHGILHLGFIVVVFHI*QERNARIH 1609
++ + FS + +I +++ T I + F + V + +ERN R H
Sbjct: 530 AIAKNVLQHRFSTDWQTIVNYISETQTDRIRSFLSRYIFQLTVHTVWKERNDRRH 584
Score = 48.5 bits (114), Expect(3) = 6e-67
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +1
Query: 1 VKINGGLYGYFKGQKWLRQGDPLSPYLFVIDVEVLSILISK 123
V++NG L GYF+ + +RQG LSPYLFVI +EVLS ++ +
Sbjct: 45 VQVNGELAGYFRSARGIRQGCALSPYLFVISMEVLSKMLDQ 85
Score = 32.3 bits (72), Expect(3) = 6e-67
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 138 QFKFYWKTKQLRLTHLYFADDLILFSMG 221
+F F+ K K L LTHL FADDL++ + G
Sbjct: 91 RFGFHPKCKNLGLTHLCFADDLMILTDG 118
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 224 bits (571), Expect(2) = 6e-64
Identities = 151/493 (30%), Positives = 241/493 (48%), Gaps = 15/493 (3%)
Frame = +2
Query: 218 GDIRSVNILKGCLTKFSSFSGIHINATKSMCYLENVPPDVYVAILTSLDFRVGIYPTKFL 397
G IRSV+ + L +F++ G+ I K+ YL V + + F VG P ++L
Sbjct: 434 GKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYL 493
Query: 398 GVPLITSKLSLADCRPLLDKITSRISS*TNRFLSYSGRLQLLKSVLFVIQSYWLSFFTLP 577
G+PL+T +L+ +D PL+D+I RI T+R+LS++GRL L+ SVL+ I ++W++ F LP
Sbjct: 494 GLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLP 553
Query: 578 VAALKELKVTFSTFLWKGPSLSKFGAKVAWSKVSLPFSEGSLGLKKLDLWNKASILLHLW 757
+ E+ S LW GP L+ AKV+W ++ P EG LGL+ L NK S L +W
Sbjct: 554 RECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIW 613
Query: 758 NIINQASSSLWAKWVRTFTLKGKHFWSMKIPNDC-S*IWKKVLIFRPLTLQHISFSIGNG 934
+++ SLW KW R LK + FWS+ + S IW+++L R + + NG
Sbjct: 614 RLLS-CQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNG 672
Query: 935 GLTKLWFDPWFSGYPLTSSPTSTLILNSGLGPNALVSSNIIRNSNWILSMSNHHAV---I 1105
T WFD W PL + + ++ G +S ++ W H V
Sbjct: 673 VNTSFWFDNWSEKGPLINLTGARGAIDMG------ISRHMTLAEAWSRRRRKRHRVEILN 726
Query: 1106 EFRQLFTPALR-CDSSREDCVSW----DNYKAPWVSTSSIWKSIRAAGNFVPLDKLVWHS 1270
EF ++ + + ED + W D +KA + ST W IR + N K VW +
Sbjct: 727 EFEEILLQKYQHRNIELEDAILWRGKEDVFKARF-STKDTWNHIRTSSNQRAWHKGVWFA 785
Query: 1271 FIPPRYSFIMCLAFQNGLR--DRLSHFGLGVNPSYQLCNAQNESFNHLFFNCPYSFKLLV 1444
P++SF LA +N L DR+ + G + C++ E+ +HLFF C YS ++
Sbjct: 786 HATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWT 845
Query: 1445 SVLRLCGWKGFSKN*ASITSFLITCPTAPIHHGILHLGFIVVVFHI*QERNARIHDR--- 1615
S+ + FS +++ +++ I + F V + I +ERN+R H
Sbjct: 846 SIAKNVYKDRFSTKWSAVVNYISDSQPDRIQSFLSRYTFQVSIHSIWRERNSRRHGEKSR 905
Query: 1616 -GATLVRAIATTM 1651
+ L+R I T+
Sbjct: 906 SASNLIRQIDKTI 918
Score = 49.3 bits (116), Expect(2) = 6e-64
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +1
Query: 1 VKINGGLYGYFKGQKWLRQGDPLSPYLFVIDVEVLSILISK 123
+++NG L GYF+ + LRQG LSPYLFVI ++VLS ++ K
Sbjct: 361 IQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDK 401
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 223 bits (567), Expect(2) = 1e-63
Identities = 147/476 (30%), Positives = 230/476 (48%), Gaps = 11/476 (2%)
Frame = +2
Query: 218 GDIRSVNILKGCLTKFSSFSGIHINATKSMCYLENVPPDVYVAILTSLDFRVGIYPTKFL 397
G RS+ + +F SG+ I+ KS Y+ V P + I F VG P ++L
Sbjct: 360 GKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYL 419
Query: 398 GVPLITSKLSLADCRPLLDKITSRISS*TNRFLSYSGRLQLLKSVLFVIQSYWLSFFTLP 577
G+PL+T +L+ AD PLL++I RI++ T RF S++GR L+KSVL+ I ++WL+ F LP
Sbjct: 420 GLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLP 479
Query: 578 VAALKELKVTFSTFLWKGPSLSKFGAKVAWSKVSLPFSEGSLGLKKLDLWNKASILLHLW 757
++E+ S+FLW G +S AK++W V P +EG LGL+ L N S L +W
Sbjct: 480 RQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVW 539
Query: 758 NIINQASSSLWAKWVRTFTLKGKHFWSMKIPNDC-S*IWKKVLIFRPLTLQHISFSIGNG 934
II+ S+SLW KWV + ++ K WS+K S IW+K+L R + +GNG
Sbjct: 540 RIISN-SNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNG 598
Query: 935 GLTKLWFDPWFSGYPLTSSPTSTLILNSGLGPNALVSSNIIRNSNWILSMSNHHAVI--E 1108
W+D W + L + ++ G+ A V+ R S H + E
Sbjct: 599 ESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVADAWTRRSR-----RRHRTSLLNE 653
Query: 1109 FRQLFTPALRCDSSREDCVSW----DNYKAPWVSTSSIWKSIRAAGNFVPLDKLVWHSFI 1276
++ S ED V W D +K P ST W I+A + V K VW
Sbjct: 654 IEEMMAYQRIHHSDAEDTVLWRGKNDVFK-PHFSTRDTWHLIKATSSTVSWHKGVWFRHA 712
Query: 1277 PPRYSFIMCLAFQNGL--RDRLSHFGL--GVNPSYQLCNAQNESFNHLFFNCPYSFKLLV 1444
P+Y+ LA N L DR+ + V+ + LC +++ HLFF+C Y+ +
Sbjct: 713 TPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWA 772
Query: 1445 SVLRLCGWKGFSKN*ASITSFLITCPTAPIHHGILHLGFIVVVFHI*QERNARIHD 1612
++ + +S + + + + T + + F ++H+ +ERN R HD
Sbjct: 773 ALAKGIWKTRYSTRWSHLLTHISTHFQDRVEGFLTRYIFQATIYHVWRERNGRRHD 828
Score = 49.7 bits (117), Expect(2) = 1e-63
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +1
Query: 1 VKINGGLYGYFKGQKWLRQGDPLSPYLFVIDVEVLSILISK 123
V++NG L GYF+ ++ LRQG LSPYLFVI ++VLS ++ K
Sbjct: 287 VQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDK 327