BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00024097
         (994 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004237282.1| ribosomal protein S4 (mitochondrion) [Ricinu...   421   e-115
ref|XP_002535173.1| Mitochondrial ribosomal protein S4, putative...   421   e-115
emb|CBX33388.1| ribosomal protein S4 (mitochondrion) [Malus x do...   420   e-115
ref|YP_006291840.1| rps4 gene product (mitochondrion) [Daucus ca...   417   e-114
ref|YP_002608192.1| ribosomal protein S4 [Carica papaya] gi|1705...   416   e-114

>ref|YP_004237282.1| ribosomal protein S4 (mitochondrion) [Ricinus communis]
           gi|322394289|gb|ADW96046.1| ribosomal protein S4
           (mitochondrion) [Ricinus communis]
          Length = 352

 Score =  421 bits (1083), Expect = e-115
 Identities = 218/262 (83%), Positives = 222/262 (84%), Gaps = 5/262 (1%)
 Frame = +3

Query: 3   RTSYIPFPLNPETRSDVIPVRLHFRETIPQARQLISHRRVCVNNGMVSITHFKVSHGDII 182
           RTSYIPF LNPETRSDVIPVRLHF ETIPQARQ ISHRRVCVNNGMVSITH KVSHGDII
Sbjct: 83  RTSYIPFLLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVSITHLKVSHGDII 142

Query: 183 SFKENDARARGEEIRRSFYIEIFVEKRIGKFRDHPVRMWRRTKTEWFRLLKTKRGCRLLL 362
           SFK NDAR RGEEIRR FYIEI VEK IGKF DHPVRMWRRTKTEWF LLKTKRGCRLLL
Sbjct: 143 SFKANDARIRGEEIRRFFYIEISVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKRGCRLLL 202

Query: 363 KDRFLQKLRSSMQEEDLEGTKKFGSEKVCLGSSFAEHNRMKRNF--DQSXXXXXXXXXXX 536
           K RFLQ+LRSSMQEEDLE TKKFGSEKVCLGSSFAEHNRMKRN    +S           
Sbjct: 203 KSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSKKRNEKN 262

Query: 537 XXXPTR---PIVYNSSFYSNSTYCSASPHQFTMKRKRKRVELPTHYSEVNHRTLKAVVSY 707
              PTR   PIVYNSS YSNS YCSASPHQFTMKR+ KR+ELPTHYSEVNHRTLKAVVSY
Sbjct: 263 RNLPTRIRSPIVYNSSLYSNSIYCSASPHQFTMKRRIKRIELPTHYSEVNHRTLKAVVSY 322

Query: 708 GPSIGHIPHDIRLKDLNLLLWS 773
           GP IGHIPHDIRLKDLNL L S
Sbjct: 323 GPKIGHIPHDIRLKDLNLPLRS 344


>ref|XP_002535173.1| Mitochondrial ribosomal protein S4, putative [Ricinus communis]
           gi|223523829|gb|EEF27209.1| Mitochondrial ribosomal
           protein S4, putative [Ricinus communis]
          Length = 276

 Score =  421 bits (1083), Expect = e-115
 Identities = 218/262 (83%), Positives = 222/262 (84%), Gaps = 5/262 (1%)
 Frame = +3

Query: 3   RTSYIPFPLNPETRSDVIPVRLHFRETIPQARQLISHRRVCVNNGMVSITHFKVSHGDII 182
           RTSYIPF LNPETRSDVIPVRLHF ETIPQARQ ISHRRVCVNNGMVSITH KVSHGDII
Sbjct: 7   RTSYIPFLLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVSITHLKVSHGDII 66

Query: 183 SFKENDARARGEEIRRSFYIEIFVEKRIGKFRDHPVRMWRRTKTEWFRLLKTKRGCRLLL 362
           SFK NDAR RGEEIRR FYIEI VEK IGKF DHPVRMWRRTKTEWF LLKTKRGCRLLL
Sbjct: 67  SFKANDARIRGEEIRRFFYIEISVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKRGCRLLL 126

Query: 363 KDRFLQKLRSSMQEEDLEGTKKFGSEKVCLGSSFAEHNRMKRNF--DQSXXXXXXXXXXX 536
           K RFLQ+LRSSMQEEDLE TKKFGSEKVCLGSSFAEHNRMKRN    +S           
Sbjct: 127 KSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSKKRNEKN 186

Query: 537 XXXPTR---PIVYNSSFYSNSTYCSASPHQFTMKRKRKRVELPTHYSEVNHRTLKAVVSY 707
              PTR   PIVYNSS YSNS YCSASPHQFTMKR+ KR+ELPTHYSEVNHRTLKAVVSY
Sbjct: 187 RNLPTRIRSPIVYNSSLYSNSIYCSASPHQFTMKRRIKRIELPTHYSEVNHRTLKAVVSY 246

Query: 708 GPSIGHIPHDIRLKDLNLLLWS 773
           GP IGHIPHDIRLKDLNL L S
Sbjct: 247 GPKIGHIPHDIRLKDLNLPLRS 268


>emb|CBX33388.1| ribosomal protein S4 (mitochondrion) [Malus x domestica]
          Length = 359

 Score =  420 bits (1079), Expect = e-115
 Identities = 215/262 (82%), Positives = 223/262 (85%), Gaps = 5/262 (1%)
 Frame = +3

Query: 3   RTSYIPFPLNPETRSDVIPVRLHFRETIPQARQLISHRRVCVNNGMVSITHFKVSHGDII 182
           RTSYIPFPLNPETRSDVIPVRLHF ETIPQARQ ISH RVCVNNGMVSITHFKVSHGD+I
Sbjct: 90  RTSYIPFPLNPETRSDVIPVRLHFCETIPQARQPISHGRVCVNNGMVSITHFKVSHGDLI 149

Query: 183 SFKENDARARGEEIRRSFYIEIFVEKRIGKFRDHPVRMWRRTKTEWFRLLKTKRGCRLLL 362
           SF+ENDAR RGEEIRRSFYIEI VEK IGKF DHPVRMWRRTK EWF LLKT RGCRLLL
Sbjct: 150 SFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRTKAEWFHLLKTHRGCRLLL 209

Query: 363 KDRFLQKLRSSMQEEDLEGTKKFGSEKVCLGSSFAEHNRMKRNF--DQSXXXXXXXXXXX 536
           K RFL++LRSSMQEEDLE TKKFGSEKVCLGSSFAEHNRMKRN    +S           
Sbjct: 210 KSRFLRQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNKKN 269

Query: 537 XXXPTR---PIVYNSSFYSNSTYCSASPHQFTMKRKRKRVELPTHYSEVNHRTLKAVVSY 707
              PTR   PIVYNSS Y NSTYCSASPHQFTMKR+ KR+ELPTH SEVNHRTLKAVVSY
Sbjct: 270 RNLPTRTRSPIVYNSSLYRNSTYCSASPHQFTMKRRIKRIELPTHXSEVNHRTLKAVVSY 329

Query: 708 GPSIGHIPHDIRLKDLNLLLWS 773
           GP+IGHIPHDIRLKDLNL L S
Sbjct: 330 GPNIGHIPHDIRLKDLNLXLRS 351


>ref|YP_006291840.1| rps4 gene product (mitochondrion) [Daucus carota subsp. sativus]
           gi|374081953|gb|AEY81145.1| ribosomal protein S4
           (mitochondrion) [Daucus carota subsp. sativus]
          Length = 279

 Score =  417 bits (1073), Expect = e-114
 Identities = 219/265 (82%), Positives = 224/265 (84%), Gaps = 8/265 (3%)
 Frame = +3

Query: 3   RTSYIPFPLNPETRSDVIPVRLHFRETIPQARQLISHRRVCVNNGMVSITHFKVSHGDII 182
           RTSYIPF LNPETRSDVIPVRLHFRETIPQARQ ISHRRVCVNNGMVSITHFKVS GDII
Sbjct: 7   RTSYIPFLLNPETRSDVIPVRLHFRETIPQARQPISHRRVCVNNGMVSITHFKVSRGDII 66

Query: 183 SFKENDARARGEEIRRSFYIEIFVEKRIGKFRDHPVRMWRRTKTEWFRLLKTKRGCRLLL 362
           SF+ENDARARGEEIRRSFYIEI VEK IGKFRDHPVRMWRRTKTEWFRLLKTKRGCRLLL
Sbjct: 67  SFQENDARARGEEIRRSFYIEISVEKIIGKFRDHPVRMWRRTKTEWFRLLKTKRGCRLLL 126

Query: 363 KDRFLQKLRSSMQEEDLEGTKKFGSE---KVCLGSSFAEHNRMKRNF--DQSXXXXXXXX 527
           KD FLQ+LRSSMQEEDLE TK F      KVCLGSSFAEHNRMKRN    +S        
Sbjct: 127 KDGFLQQLRSSMQEEDLERTKNFFGSIKIKVCLGSSFAEHNRMKRNLYHFKSLFLSKRRN 186

Query: 528 XXXXXXPTR---PIVYNSSFYSNSTYCSASPHQFTMKRKRKRVELPTHYSEVNHRTLKAV 698
                 PTR   PIVYNSS YSNSTYCSA  HQFTMKRK KR+ELPTHYSEVNHRTLKAV
Sbjct: 187 EKNRNLPTRTRSPIVYNSSLYSNSTYCSAPSHQFTMKRKIKRIELPTHYSEVNHRTLKAV 246

Query: 699 VSYGPSIGHIPHDIRLKDLNLLLWS 773
           VSYGP+IGHIPHDIRLKD NLLL S
Sbjct: 247 VSYGPNIGHIPHDIRLKDPNLLLRS 271


>ref|YP_002608192.1| ribosomal protein S4 [Carica papaya] gi|170522371|gb|ACB20481.1|
           ribosomal protein S4, partial (mitochondrion) [Carica
           papaya]
          Length = 352

 Score =  416 bits (1068), Expect = e-114
 Identities = 212/262 (80%), Positives = 225/262 (85%), Gaps = 5/262 (1%)
 Frame = +3

Query: 3   RTSYIPFPLNPETRSDVIPVRLHFRETIPQARQLISHRRVCVNNGMVSITHFKVSHGDII 182
           RTSYIPFPLNPETR DVIPVRLHFRET+PQARQ ISHRRVCVNNGMVSIT  K+SHGDII
Sbjct: 83  RTSYIPFPLNPETRLDVIPVRLHFRETLPQARQPISHRRVCVNNGMVSITRLKLSHGDII 142

Query: 183 SFKENDARARGEEIRRSFYIEIFVEKRIGKFRDHPVRMWRRTKTEWFRLLKTKRGCRLLL 362
           SF+ENDAR RGEEIRRSFYIEI VEK IGKFR+HPVRMWRRTKT+WF LLKTKRGCRLLL
Sbjct: 143 SFQENDARIRGEEIRRSFYIEISVEKIIGKFRNHPVRMWRRTKTKWFHLLKTKRGCRLLL 202

Query: 363 KDRFLQKLRSSMQEEDLEGTKKFGSEKVCLGSSFAEHNRMKRNF--DQSXXXXXXXXXXX 536
           K RFLQKLRSSMQ+EDLE TKKFGSEKVCLGSSFAEHNRMKRN    +S           
Sbjct: 203 KSRFLQKLRSSMQKEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSKRRNEKN 262

Query: 537 XXXPTR---PIVYNSSFYSNSTYCSASPHQFTMKRKRKRVELPTHYSEVNHRTLKAVVSY 707
              PTR   PIVYNSS YSNSTYCSASP ++TMKR+RKR++LPTHYSEVNHRT KAVVSY
Sbjct: 263 RNLPTRTRSPIVYNSSLYSNSTYCSASPQKWTMKRRRKRIKLPTHYSEVNHRTPKAVVSY 322

Query: 708 GPSIGHIPHDIRLKDLNLLLWS 773
           GP+IGHIPHDIRLKD NL L S
Sbjct: 323 GPNIGHIPHDIRLKDPNLPLRS 344