BLASTX nr result

ID: Panax21_contig00024019 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00024019
         (388 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002312219.1| predicted protein [Populus trichocarpa] gi|2...   160   8e-38
ref|XP_002265730.2| PREDICTED: nuclear-pore anchor-like [Vitis v...   160   1e-37
emb|CBI24130.3| unnamed protein product [Vitis vinifera]              160   1e-37
ref|XP_002518821.1| Nucleoprotein TPR, putative [Ricinus communi...   155   3e-36
ref|XP_003546839.1| PREDICTED: nuclear-pore anchor-like [Glycine...   140   1e-31

>ref|XP_002312219.1| predicted protein [Populus trichocarpa] gi|222852039|gb|EEE89586.1|
           predicted protein [Populus trichocarpa]
          Length = 2052

 Score =  160 bits (406), Expect = 8e-38
 Identities = 81/129 (62%), Positives = 105/129 (81%), Gaps = 1/129 (0%)
 Frame = -1

Query: 388 QLTSLQEELCSSKDXXXXXXXXXXXEISTVTKLVELYKESSEEWSKKAGELEGVIKALET 209
           +LTS+QEELCSS+D           E+STV KLVELYKESSEEWS+KAGELEGVIKALET
Sbjct: 252 KLTSVQEELCSSRDAAAANEERLSAELSTVNKLVELYKESSEEWSQKAGELEGVIKALET 311

Query: 208 HMSQVESDYKERFDNEVSARKEYEKEAACLKEKLDKCEAELESARNSNEMNLLTLSS-PT 32
           H+SQVE+DYKER + E+SARK+ EKEA  LK+KL++CEA++ES+R +NE++LL L+S  T
Sbjct: 312 HLSQVENDYKERLEKEISARKQLEKEAGDLKDKLERCEADIESSRKTNELSLLPLNSYTT 371

Query: 31  KTWVNSVEN 5
           + W++ + N
Sbjct: 372 ERWMDPLNN 380


>ref|XP_002265730.2| PREDICTED: nuclear-pore anchor-like [Vitis vinifera]
          Length = 2087

 Score =  160 bits (404), Expect = 1e-37
 Identities = 85/131 (64%), Positives = 102/131 (77%), Gaps = 2/131 (1%)
 Frame = -1

Query: 388 QLTSLQEELCSSKDXXXXXXXXXXXEISTVTKLVELYKESSEEWSKKAGELEGVIKALET 209
           +LTS+Q+ELCSSKD           EI TV KLVELYKESSEEWS+KAGELEGVIKALET
Sbjct: 252 KLTSMQQELCSSKDAAAANEQRLSAEIMTVNKLVELYKESSEEWSRKAGELEGVIKALET 311

Query: 208 HMSQVESDYKERFDNEVSARKEYEKEAACLKEKLDKCEAELESARNSNEMNLLTLSS--P 35
           H+ QVE+DYKER + EV ARKE EKEAA LK KL+KCEAE+E++R +NE+NLL LSS   
Sbjct: 312 HLIQVENDYKERLEKEVFARKELEKEAADLKGKLEKCEAEMETSRRANELNLLPLSSLIT 371

Query: 34  TKTWVNSVENS 2
             TW++S + +
Sbjct: 372 GTTWLDSFQTN 382


>emb|CBI24130.3| unnamed protein product [Vitis vinifera]
          Length = 2088

 Score =  160 bits (404), Expect = 1e-37
 Identities = 85/131 (64%), Positives = 102/131 (77%), Gaps = 2/131 (1%)
 Frame = -1

Query: 388 QLTSLQEELCSSKDXXXXXXXXXXXEISTVTKLVELYKESSEEWSKKAGELEGVIKALET 209
           +LTS+Q+ELCSSKD           EI TV KLVELYKESSEEWS+KAGELEGVIKALET
Sbjct: 252 KLTSMQQELCSSKDAAAANEQRLSAEIMTVNKLVELYKESSEEWSRKAGELEGVIKALET 311

Query: 208 HMSQVESDYKERFDNEVSARKEYEKEAACLKEKLDKCEAELESARNSNEMNLLTLSS--P 35
           H+ QVE+DYKER + EV ARKE EKEAA LK KL+KCEAE+E++R +NE+NLL LSS   
Sbjct: 312 HLIQVENDYKERLEKEVFARKELEKEAADLKGKLEKCEAEMETSRRANELNLLPLSSLIT 371

Query: 34  TKTWVNSVENS 2
             TW++S + +
Sbjct: 372 GTTWLDSFQTN 382


>ref|XP_002518821.1| Nucleoprotein TPR, putative [Ricinus communis]
           gi|223541994|gb|EEF43539.1| Nucleoprotein TPR, putative
           [Ricinus communis]
          Length = 2095

 Score =  155 bits (392), Expect = 3e-36
 Identities = 81/130 (62%), Positives = 99/130 (76%), Gaps = 1/130 (0%)
 Frame = -1

Query: 388 QLTSLQEELCSSKDXXXXXXXXXXXEISTVTKLVELYKESSEEWSKKAGELEGVIKALET 209
           +L S+QEELCS +D           EIST+ KLVELYKESSEEWSKKAGELEGVIKALET
Sbjct: 252 KLASMQEELCSHRDAAAANEERFSAEISTINKLVELYKESSEEWSKKAGELEGVIKALET 311

Query: 208 HMSQVESDYKERFDNEVSARKEYEKEAACLKEKLDKCEAELESARNSNEMNLLTLSSPT- 32
           H++QVE+DYKER D E+ AR + +KEAA LK KL  CEAE+ES R +NE+NLL L S T 
Sbjct: 312 HLNQVENDYKERLDKEICARNQLQKEAADLKNKLANCEAEVESGRKANELNLLPLGSLTI 371

Query: 31  KTWVNSVENS 2
           + W +S+++S
Sbjct: 372 ERWKDSLDSS 381


>ref|XP_003546839.1| PREDICTED: nuclear-pore anchor-like [Glycine max]
          Length = 2075

 Score =  140 bits (353), Expect = 1e-31
 Identities = 73/128 (57%), Positives = 96/128 (75%), Gaps = 1/128 (0%)
 Frame = -1

Query: 388 QLTSLQEELCSSKDXXXXXXXXXXXEISTVTKLVELYKESSEEWSKKAGELEGVIKALET 209
           +L S+QEEL S+KD           E+STV KL ELYKESSEEWSKKA +LEGVIKA+E+
Sbjct: 252 KLKSVQEELISAKDVAAANEEQLSAELSTVNKLNELYKESSEEWSKKAADLEGVIKAMES 311

Query: 208 HMSQVESDYKERFDNEVSARKEYEKEAACLKEKLDKCEAELESARNSNEMNLLTLSS-PT 32
           H  QVE DYKE+ + E+SARK+ EKEA  LKE+L+KCEAE+E+ + ++ +N L LSS  T
Sbjct: 312 HQKQVEDDYKEKLEKELSARKQVEKEATDLKERLEKCEAEIETRKKTDGVNNLPLSSFAT 371

Query: 31  KTWVNSVE 8
           ++W+ S+E
Sbjct: 372 ESWMESIE 379


Top