BLASTX nr result

ID: Panax21_contig00024014 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00024014
         (466 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004160161.1| PREDICTED: RING finger protein 150-like [Cuc...    93   3e-17
ref|XP_002309999.1| predicted protein [Populus trichocarpa] gi|2...    92   4e-17
ref|XP_002306334.1| predicted protein [Populus trichocarpa] gi|2...    87   1e-15
ref|XP_003602018.1| RING finger family protein [Medicago truncat...    85   5e-15
ref|XP_002310001.1| predicted protein [Populus trichocarpa] gi|2...    82   5e-14

>ref|XP_004160161.1| PREDICTED: RING finger protein 150-like [Cucumis sativus]
          Length = 208

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 51/108 (47%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
 Frame = -2

Query: 330 MSALSQFFSHXXXXXXXXXXXXXXXXXXFVRSITGHIFPTGNGPITTAQYLKLIERKNPA 151
           M ALS+FFSH                   +R+I G    +    ITTAQ+ KLIE KNP 
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60

Query: 150 NRFKAGLKEE-SKECSVCLSTFEEGEEIRKLKQCKHTFHKDCLDTWLR 10
            RF   +    + +C+VCLS FEEGE++RKL QC HTFHKDCLD WL+
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLK 107


>ref|XP_002309999.1| predicted protein [Populus trichocarpa] gi|222852902|gb|EEE90449.1|
           predicted protein [Populus trichocarpa]
          Length = 163

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 48/110 (43%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
 Frame = -2

Query: 330 MSALSQFFSHXXXXXXXXXXXXXXXXXXFVRSITGHIFPTGNGPITTAQYLKLIERKNPA 151
           M++LS+FFSH                    +S+ G    +    I+T QYLK +E KNP 
Sbjct: 1   MASLSEFFSHLYTMSIVFLSLLLVEIVILFQSVIGSTLKSNKPIISTTQYLKHMEEKNPT 60

Query: 150 NRFKAGL--KEESKECSVCLSTFEEGEEIRKLKQCKHTFHKDCLDTWLRQ 7
             +   L  +++S EC+VCLS F EGE +RKL  CKHTFHKDCLD WL+Q
Sbjct: 61  ISYSEKLTRQQDSMECAVCLSKFSEGESVRKLN-CKHTFHKDCLDKWLQQ 109


>ref|XP_002306334.1| predicted protein [Populus trichocarpa] gi|222855783|gb|EEE93330.1|
           predicted protein [Populus trichocarpa]
          Length = 149

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 43/81 (53%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
 Frame = -2

Query: 243 VRSITGHIFPTGNGPITTAQYLKLIERKNPANRFKAGL--KEESKECSVCLSTFEEGEEI 70
           +RS+ G    +    I+T QYL+ IE KNP   +   L  +++S EC+VCLS F EGE +
Sbjct: 17  IRSVIGSTLKSDKPIISTTQYLRHIEEKNPTISYSKQLMRQQDSIECAVCLSEFSEGESV 76

Query: 69  RKLKQCKHTFHKDCLDTWLRQ 7
           RKLK CKHTFHKDCLD WL+Q
Sbjct: 77  RKLK-CKHTFHKDCLDEWLQQ 96


>ref|XP_003602018.1| RING finger family protein [Medicago truncatula]
           gi|355491066|gb|AES72269.1| RING finger family protein
           [Medicago truncatula]
          Length = 157

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 40/63 (63%), Positives = 47/63 (74%)
 Frame = -2

Query: 198 ITTAQYLKLIERKNPANRFKAGLKEESKECSVCLSTFEEGEEIRKLKQCKHTFHKDCLDT 19
           ITT QY+K IE KNP  R+   L     +CSVCLS FEEGE++R+LK CKHTFHKDCLD 
Sbjct: 41  ITTRQYIKFIEEKNPTIRYNKKLNSHG-DCSVCLSEFEEGEKVRRLK-CKHTFHKDCLDK 98

Query: 18  WLR 10
           WL+
Sbjct: 99  WLQ 101


>ref|XP_002310001.1| predicted protein [Populus trichocarpa] gi|222852904|gb|EEE90451.1|
           predicted protein [Populus trichocarpa]
          Length = 164

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 39/65 (60%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = -2

Query: 198 ITTAQYLKLIERKNPANRFKAGLKE-ESKECSVCLSTFEEGEEIRKLKQCKHTFHKDCLD 22
           I T QY  L+E KNP   +   L+  ES+EC+VCLS F EGE +RKLK CKHTFHKDCLD
Sbjct: 48  IITTQYFNLVEEKNPTICYSENLRHHESRECAVCLSEFLEGESLRKLK-CKHTFHKDCLD 106

Query: 21  TWLRQ 7
            WL +
Sbjct: 107 KWLEE 111


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