BLASTX nr result

ID: Panax21_contig00024013 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00024013
         (723 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309999.1| predicted protein [Populus trichocarpa] gi|2...   110   2e-22
ref|XP_004160161.1| PREDICTED: RING finger protein 150-like [Cuc...   109   5e-22
ref|XP_002310000.1| predicted protein [Populus trichocarpa] gi|2...    99   9e-19
ref|XP_002306335.1| predicted protein [Populus trichocarpa] gi|2...    98   2e-18
ref|XP_002306334.1| predicted protein [Populus trichocarpa] gi|2...    94   2e-17

>ref|XP_002309999.1| predicted protein [Populus trichocarpa] gi|222852902|gb|EEE90449.1|
           predicted protein [Populus trichocarpa]
          Length = 163

 Score =  110 bits (276), Expect = 2e-22
 Identities = 63/148 (42%), Positives = 83/148 (56%), Gaps = 21/148 (14%)
 Frame = -3

Query: 658 MSALSRFFSHLYTITLLFFTLRCFQLLFFVRIFIRHISLTGNGPI---TAGLK------- 509
           M++LS FFSHLYT++++F +L   +++   +  I   +L  N PI   T  LK       
Sbjct: 1   MASLSEFFSHLYTMSIVFLSLLLVEIVILFQSVIGS-TLKSNKPIISTTQYLKHMEEKNP 59

Query: 508 -----------EESEECSVCLSTFEEGEEIRKLKQCKHTFHKDCLDTWLRQDCTTCPLCR 362
                      ++S EC+VCLS F EGE +RKL  CKHTFHKDCLD WL+Q   TCPLCR
Sbjct: 60  TISYSEKLTRQQDSMECAVCLSKFSEGESVRKLN-CKHTFHKDCLDKWLQQSLATCPLCR 118

Query: 361 KSVLPEEIVXXXXXXXXXXXXYGIDEDL 278
             VLP+EIV             G DE++
Sbjct: 119 AKVLPDEIVAKYDRMQNQIGYDGSDEEM 146


>ref|XP_004160161.1| PREDICTED: RING finger protein 150-like [Cucumis sativus]
          Length = 208

 Score =  109 bits (273), Expect = 5e-22
 Identities = 59/156 (37%), Positives = 85/156 (54%), Gaps = 22/156 (14%)
 Frame = -3

Query: 658 MSALSRFFSHLYTITLLFFTLRCFQLLFFVRIFI----------------------RHIS 545
           M ALS FFSHL+T+T +FFTL   + +  +R                         ++ +
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60

Query: 544 LTGNGPITAGLKEESEECSVCLSTFEEGEEIRKLKQCKHTFHKDCLDTWLRQDCTTCPLC 365
           +  +  +T  +   +++C+VCLS FEEGE++RKL QC HTFHKDCLD WL+    TCPLC
Sbjct: 61  IRFSNKVTPSI---ADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLCFATCPLC 116

Query: 364 RKSVLPEEIVXXXXXXXXXXXXYGIDEDLLNIVYIL 257
           R  VLP++IV             G DE+L+ ++  L
Sbjct: 117 RSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSAL 152


>ref|XP_002310000.1| predicted protein [Populus trichocarpa] gi|222852903|gb|EEE90450.1|
           predicted protein [Populus trichocarpa]
          Length = 164

 Score = 99.0 bits (245), Expect = 9e-19
 Identities = 55/130 (42%), Positives = 71/130 (54%), Gaps = 22/130 (16%)
 Frame = -3

Query: 658 MSALSRFFSHLYTITLLFFTLRCFQLLFFVRIFI-----------------RHISLTGNG 530
           M+AL   F HLYTI++ FF L   + LF +R F+                 +++++    
Sbjct: 1   MAALLNVFPHLYTISVSFFNLLLLKALFLIRCFVPGSEVANPDKLFRIISTQYLNIIEKT 60

Query: 529 PITAGLKEE-----SEECSVCLSTFEEGEEIRKLKQCKHTFHKDCLDTWLRQDCTTCPLC 365
             T    E+     S EC+VCLS F EGE +R LK C HTFH +CLD WL Q   TCPLC
Sbjct: 61  NPTLHYCEKITRPRSRECAVCLSEFTEGERVRTLK-CHHTFHNECLDKWLHQSMATCPLC 119

Query: 364 RKSVLPEEIV 335
           R  VLP+EIV
Sbjct: 120 RTVVLPDEIV 129


>ref|XP_002306335.1| predicted protein [Populus trichocarpa] gi|222855784|gb|EEE93331.1|
           predicted protein [Populus trichocarpa]
          Length = 164

 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 53/130 (40%), Positives = 71/130 (54%), Gaps = 22/130 (16%)
 Frame = -3

Query: 658 MSALSRFFSHLYTITLLFFTLRCFQLLFFVRIFIRHISLTGNGPITAGL----------- 512
           M+AL + FSHLYT  +  F L   + LF +R  +    LT    +   +           
Sbjct: 1   MAALLKVFSHLYTAIMSSFNLILLKTLFLIRSLLPGSKLTNPDKLFLIISTQYLSLIEKT 60

Query: 511 -----------KEESEECSVCLSTFEEGEEIRKLKQCKHTFHKDCLDTWLRQDCTTCPLC 365
                      +++S EC+VCLS F +GE +RKL+ C HTFHK+CLD WL+Q   TCPLC
Sbjct: 61  NPAIHYSEKFSRQQSRECAVCLSGFMKGERVRKLR-CNHTFHKECLDKWLQQYLATCPLC 119

Query: 364 RKSVLPEEIV 335
           R  VLP+EIV
Sbjct: 120 RTRVLPDEIV 129


>ref|XP_002306334.1| predicted protein [Populus trichocarpa] gi|222855783|gb|EEE93330.1|
           predicted protein [Populus trichocarpa]
          Length = 149

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 43/79 (54%), Positives = 54/79 (68%)
 Frame = -3

Query: 511 KEESEECSVCLSTFEEGEEIRKLKQCKHTFHKDCLDTWLRQDCTTCPLCRKSVLPEEIVX 332
           +++S EC+VCLS F EGE +RKLK CKHTFHKDCLD WL+Q   TCPLCR  VLP+EI+ 
Sbjct: 57  QQDSIECAVCLSEFSEGESVRKLK-CKHTFHKDCLDEWLQQCLATCPLCRAKVLPDEILA 115

Query: 331 XXXXXXXXXXXYGIDEDLL 275
                       G DE+++
Sbjct: 116 KYDRMQSQIEYDGSDEEMI 134


Top