BLASTX nr result

ID: Panax21_contig00023888 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00023888
         (615 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267100.2| PREDICTED: zinc finger CCCH domain-containin...   149   3e-34
emb|CBI17411.3| unnamed protein product [Vitis vinifera]              123   3e-26
ref|XP_002327676.1| predicted protein [Populus trichocarpa] gi|2...    99   5e-19
ref|XP_003516552.1| PREDICTED: zinc finger CCCH domain-containin...    98   1e-18
ref|XP_004164844.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger ...    97   3e-18

>ref|XP_002267100.2| PREDICTED: zinc finger CCCH domain-containing protein 44-like [Vitis
            vinifera]
          Length = 1643

 Score =  149 bits (377), Expect = 3e-34
 Identities = 92/203 (45%), Positives = 118/203 (58%), Gaps = 3/203 (1%)
 Frame = -1

Query: 606  KLWHYRDPNGKIQGPFCMVQLQKWSTTGYFPRDMRIW-AGDRQDDSILLTDALNGKFHKV 430
            K+WHY+DP GKIQGPF MVQL+KWS  G+FP  +RIW   ++QDDSILLTDA+N ++HK 
Sbjct: 943  KIWHYQDPAGKIQGPFGMVQLRKWSANGFFPPHLRIWRMNEKQDDSILLTDAMNLQYHKE 1002

Query: 429  LPLLNDISSQLREVGGASDGKIYNSDVGWGENVNVT-RDVKQTEGHWHGNIATVHSSSNN 253
             PL N+   Q ++V   S  +  N D G   ++N T    K  EG  + N AT+ S+ NN
Sbjct: 1003 PPLQNNSLLQSQQVRVVSKDRENNWDGGLNGSMNATWIGNKLNEGPGNSNDATI-SNGNN 1061

Query: 252  KLVRSDRCGXXXXXXXXXXXSY-KKEIPAGSCSQEQDSFKGNSSCYNHLRVHSPLSSSTL 76
            +LV+ D  G               KE+  GS SQ  DS KGNSS  +  +V+S LSSSTL
Sbjct: 1062 ELVKRDGWGSCSSSWSTPADIMNSKEVEIGSFSQGWDSLKGNSSWSDQPQVYSSLSSSTL 1121

Query: 75   SGKEFATFSHNEKNAEVRSNSDP 7
            SGK F T  H  +        DP
Sbjct: 1122 SGKSFGTGLHQGREGHGVERWDP 1144


>emb|CBI17411.3| unnamed protein product [Vitis vinifera]
          Length = 1362

 Score =  123 bits (308), Expect = 3e-26
 Identities = 74/163 (45%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
 Frame = -1

Query: 606  KLWHYRDPNGKIQGPFCMVQLQKWSTTGYFPRDMRIW-AGDRQDDSILLTDALNGKFHKV 430
            K+WHY+DP GKIQGPF MVQL+KWS  G+FP  +RIW   ++QDDSILLTDA+N ++HK 
Sbjct: 863  KIWHYQDPAGKIQGPFGMVQLRKWSANGFFPPHLRIWRMNEKQDDSILLTDAMNLQYHKE 922

Query: 429  LPLLNDISSQLREVGGASDGKIYNSDVGWGENVNVT-RDVKQTEGHWHGNIATVHSSSNN 253
             PL N+   Q ++V   S  +  N D G   ++N T    K  EG  + N AT+ S+ NN
Sbjct: 923  PPLQNNSLLQSQQVRVVSKDRENNWDGGLNGSMNATWIGNKLNEGPGNSNDATI-SNGNN 981

Query: 252  KLVRSDRCGXXXXXXXXXXXSY-KKEIPAGSCSQEQDSFKGNS 127
            +LV+ D  G               KE+  GS SQ  DS KGN+
Sbjct: 982  ELVKRDGWGSCSSSWSTPADIMNSKEVEIGSFSQGWDSLKGNT 1024


>ref|XP_002327676.1| predicted protein [Populus trichocarpa] gi|222836761|gb|EEE75154.1|
           predicted protein [Populus trichocarpa]
          Length = 825

 Score = 99.4 bits (246), Expect = 5e-19
 Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
 Frame = -1

Query: 606 KLWHYRDPNGKIQGPFCMVQLQKWSTTGYFPRDMRIW-AGDRQDDSILLTDALNGKFHKV 430
           KLWHY+DP GK QGPF M QL+KWST+G FP D+R+W   ++ DDSILLT+AL G+FHK 
Sbjct: 439 KLWHYQDPTGKTQGPFAMAQLRKWSTSGLFPHDLRVWKINEKPDDSILLTNALVGRFHKE 498

Query: 429 LPLLNDISSQLREVGGASDGKIYNSDVGWGENVNVTRDVKQTEGHWHG--NIATVHSSSN 256
            P L+   S L +    S  K    + G  +N++  +   +   +W    N A+ + + +
Sbjct: 499 -PALSHNRSSLAQEATVSSDKDKMHEFGMNQNIDAVQLDNKNINNWKSVQNNASANCNDD 557

Query: 255 NKLVRSD 235
           ++ + S+
Sbjct: 558 DEFLGSN 564


>ref|XP_003516552.1| PREDICTED: zinc finger CCCH domain-containing protein 44-like
            [Glycine max]
          Length = 1953

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 11/191 (5%)
 Frame = -1

Query: 606  KLWHYRDPNGKIQGPFCMVQLQKWSTTGYFPRDMRIWAGDR-QDDSILLTDALNGKFHKV 430
            K WHY+DP GK+QGPF ++QL KW+  GYFP D+RIW  D  Q++SI LTD LNGK  K 
Sbjct: 1560 KPWHYQDPTGKVQGPFSLLQLYKWNACGYFPSDLRIWRVDETQNNSIFLTDVLNGKCSKN 1619

Query: 429  LPLLNDISSQLREVGGASDGKIYNSDVGWGENVNVTRD--------VKQTEGHWHGNIAT 274
            + L N+            + K  + D G  EN N TR+        V+Q +      +A 
Sbjct: 1620 VSLPNNSQQLSLGTNSTLENKENSQDGGENEN-NATRNGNSANHQIVEQCD---EQKVAD 1675

Query: 273  VHSSSNNK--LVRSDRCGXXXXXXXXXXXSYKKEIPAGSCSQEQDSFKGNSSCYNHLRVH 100
             ++ SN K   VRS+                  E  +G+  + ++S K   SC++   V+
Sbjct: 1676 TYTQSNGKDESVRSNGWNSQSPGLTIQADGNNNEGQSGNSERMEESPKCEISCHDIPHVY 1735

Query: 99   SPLSSSTLSGK 67
            + L S+  S K
Sbjct: 1736 TSLPSTAFSEK 1746



 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 48/98 (48%), Positives = 64/98 (65%), Gaps = 3/98 (3%)
 Frame = -1

Query: 600  WHYRDPNGKIQGPFCMVQLQKWSTTGYFPRDMRIW-AGDRQDDSILLTDALNGKFHKVLP 424
            WHY+DP GKIQGPF M+QL KW+ +G FP D+RIW  G++QD+SILLTDAL+GK  K + 
Sbjct: 748  WHYQDPTGKIQGPFSMLQLYKWNASGCFPPDLRIWRVGEKQDNSILLTDALSGKCSKNVS 807

Query: 423  LLNDISSQLREVGGA--SDGKIYNSDVGWGENVNVTRD 316
            L    +SQL  +G +   D K  + D G      ++ D
Sbjct: 808  L--PFNSQLLSLGVSVTLDNKDNSQDAGKNGKNEISAD 843


>ref|XP_004164844.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing
            protein 19-like [Cucumis sativus]
          Length = 1475

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 42/66 (63%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
 Frame = -1

Query: 606  KLWHYRDPNGKIQGPFCMVQLQKWSTTGYFPRDMRIW-AGDRQDDSILLTDALNGKFHKV 430
            K+WHY+DP+GK+QGPF MVQL+KWS TGYFP D+RIW   D+Q+DS+LLTD L GK  K 
Sbjct: 893  KIWHYQDPSGKVQGPFSMVQLRKWSNTGYFPTDLRIWRISDQQEDSLLLTDVLAGKISKD 952

Query: 429  LPLLND 412
             PL ++
Sbjct: 953  TPLTSN 958


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