BLASTX nr result

ID: Panax21_contig00023585 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00023585
         (691 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK47703.1| unknown [Medicago truncatula]                          124   1e-26
ref|XP_003610521.1| Ribosomal RNA processing protein-like protei...   124   1e-26
ref|XP_002318342.1| predicted protein [Populus trichocarpa] gi|2...   124   1e-26
ref|XP_002267225.2| PREDICTED: uncharacterized protein LOC100247...   120   3e-25
emb|CAN72961.1| hypothetical protein VITISV_016489 [Vitis vinifera]   120   3e-25

>gb|AFK47703.1| unknown [Medicago truncatula]
          Length = 546

 Score =  124 bits (312), Expect = 1e-26
 Identities = 74/159 (46%), Positives = 94/159 (59%)
 Frame = +3

Query: 3   SLLDSPKIAFKRTNPKKRKRVRSVDGQKSQYPELSGLGDXXXXXXXXXXXXXXXXXXXXX 182
           SL  +PK A   +  KKRKR ++  G+ SQ  +L+G GD                     
Sbjct: 413 SLCATPKAAGDVS--KKRKRTKNSKGKTSQDFDLNG-GDAED------------------ 451

Query: 183 XXXXGDAAAKTNEKSAKKVRFSIKNNLVWKPHSPMPPQDLRLPPSVTPRGSALKKGLSPG 362
                 A AK+ +KS+KKVRFS+KNNLVWKPHSP+PPQ LR+PPSVTPRGSALK+G+ PG
Sbjct: 452 -----SAVAKSGDKSSKKVRFSMKNNLVWKPHSPLPPQSLRIPPSVTPRGSALKQGVPPG 506

Query: 363 PIREMPPATXXXXXXXXXXXXXXPISPSIKRLRKLQSLS 479
           PIREMP                  + PS+KR++KL+SLS
Sbjct: 507 PIREMPLQNKKAKLKKAGRRTIIGVVPSVKRMKKLRSLS 545


>ref|XP_003610521.1| Ribosomal RNA processing protein-like protein [Medicago truncatula]
           gi|355511576|gb|AES92718.1| Ribosomal RNA processing
           protein-like protein [Medicago truncatula]
          Length = 546

 Score =  124 bits (312), Expect = 1e-26
 Identities = 74/159 (46%), Positives = 94/159 (59%)
 Frame = +3

Query: 3   SLLDSPKIAFKRTNPKKRKRVRSVDGQKSQYPELSGLGDXXXXXXXXXXXXXXXXXXXXX 182
           SL  +PK A   +  KKRKR ++  G+ SQ  +L+G GD                     
Sbjct: 413 SLCATPKAAGDVS--KKRKRTKNSKGKTSQDFDLNG-GDAED------------------ 451

Query: 183 XXXXGDAAAKTNEKSAKKVRFSIKNNLVWKPHSPMPPQDLRLPPSVTPRGSALKKGLSPG 362
                 A AK+ +KS+KKVRFS+KNNLVWKPHSP+PPQ LR+PPSVTPRGSALK+G+ PG
Sbjct: 452 -----SAVAKSGDKSSKKVRFSMKNNLVWKPHSPLPPQSLRIPPSVTPRGSALKQGVPPG 506

Query: 363 PIREMPPATXXXXXXXXXXXXXXPISPSIKRLRKLQSLS 479
           PIREMP                  + PS+KR++KL+SLS
Sbjct: 507 PIREMPLQNKKAKLKKAGRRTIIGVVPSVKRMKKLRSLS 545


>ref|XP_002318342.1| predicted protein [Populus trichocarpa] gi|222859015|gb|EEE96562.1|
           predicted protein [Populus trichocarpa]
          Length = 545

 Score =  124 bits (312), Expect = 1e-26
 Identities = 69/159 (43%), Positives = 90/159 (56%)
 Frame = +3

Query: 3   SLLDSPKIAFKRTNPKKRKRVRSVDGQKSQYPELSGLGDXXXXXXXXXXXXXXXXXXXXX 182
           S+ D PK+       KKRKR + V+ ++S+  E +G  D                     
Sbjct: 407 SVCDFPKVTGNGNLSKKRKRAKRVELKQSENQESNGQEDDEAGT---------------- 450

Query: 183 XXXXGDAAAKTNEKSAKKVRFSIKNNLVWKPHSPMPPQDLRLPPSVTPRGSALKKGLSPG 362
                   AK+ EKSAKKVRFS+KNNL+WKP +P+PPQ LR+PPSVTPRGSALKKG+ PG
Sbjct: 451 -----STMAKSTEKSAKKVRFSMKNNLIWKPSTPLPPQSLRIPPSVTPRGSALKKGIPPG 505

Query: 363 PIREMPPATXXXXXXXXXXXXXXPISPSIKRLRKLQSLS 479
           P+REMP                  ISP+ KR++KL+SL+
Sbjct: 506 PVREMPAKKNMKQRAKSMKKVIKGISPATKRVKKLKSLA 544


>ref|XP_002267225.2| PREDICTED: uncharacterized protein LOC100247924 [Vitis vinifera]
          Length = 547

 Score =  120 bits (300), Expect = 3e-25
 Identities = 75/161 (46%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
 Frame = +3

Query: 6   LLDSPKIAFKRTNPKKRKRVRSVDGQKSQYPELSGLGDXXXXXXXXXXXXXXXXXXXXXX 185
           L DSP      T  KKRKR ++     +   ++S  GD                      
Sbjct: 414 LCDSPTRPVNGTVSKKRKRAKN-----NNEHDVSSQGDDE-------------------- 448

Query: 186 XXXGDAAAKTNEKSAKKVRFSIKNNLVWKPHSPMPPQDLRLPPSVTPRGSALKKGLSPGP 365
                A AK+  KSAKKV+FSIKNNLVWKP SP+PPQ LRLPPSVTPRGSALKKG+ PGP
Sbjct: 449 ---SSALAKSKGKSAKKVKFSIKNNLVWKPQSPLPPQSLRLPPSVTPRGSALKKGIPPGP 505

Query: 366 IREMP---PATXXXXXXXXXXXXXXPISPSIKRLRKLQSLS 479
           +REMP                     ISP+IKRL+KLQSLS
Sbjct: 506 VREMPQTKKVKKRAKSLKKGRNGIKSISPAIKRLKKLQSLS 546


>emb|CAN72961.1| hypothetical protein VITISV_016489 [Vitis vinifera]
          Length = 547

 Score =  120 bits (300), Expect = 3e-25
 Identities = 75/161 (46%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
 Frame = +3

Query: 6   LLDSPKIAFKRTNPKKRKRVRSVDGQKSQYPELSGLGDXXXXXXXXXXXXXXXXXXXXXX 185
           L DSP      T  KKRKR ++     +   ++S  GD                      
Sbjct: 414 LCDSPTRLVNGTVSKKRKRAKN-----NNEHDVSSQGDDE-------------------- 448

Query: 186 XXXGDAAAKTNEKSAKKVRFSIKNNLVWKPHSPMPPQDLRLPPSVTPRGSALKKGLSPGP 365
                A AK+  KSAKKV+FSIKNNLVWKP SP+PPQ LRLPPSVTPRGSALKKG+ PGP
Sbjct: 449 ---SSALAKSKGKSAKKVKFSIKNNLVWKPQSPLPPQSLRLPPSVTPRGSALKKGIPPGP 505

Query: 366 IREMP---PATXXXXXXXXXXXXXXPISPSIKRLRKLQSLS 479
           +REMP                     ISP+IKRL+KLQSLS
Sbjct: 506 VREMPQTKKVKKRAKSLKKGRNGIKSISPAIKRLKKLQSLS 546


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