BLASTX nr result

ID: Panax21_contig00023557 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00023557
         (523 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266157.1| PREDICTED: ATP-dependent RNA helicase DBP2 [...    87   2e-15
ref|XP_002326066.1| predicted protein [Populus trichocarpa] gi|2...    85   6e-15
ref|XP_002523955.1| dead box ATP-dependent RNA helicase, putativ...    83   2e-14
ref|XP_002319430.1| predicted protein [Populus trichocarpa] gi|2...    79   5e-13
ref|XP_001786160.1| predicted protein [Physcomitrella patens sub...    67   2e-09

>ref|XP_002266157.1| PREDICTED: ATP-dependent RNA helicase DBP2 [Vitis vinifera]
           gi|297745752|emb|CBI15808.3| unnamed protein product
           [Vitis vinifera]
          Length = 568

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 45/83 (54%), Positives = 55/83 (66%)
 Frame = -2

Query: 522 FLVAQIRKAISDVQSGNTVAFATGKVXXXXXXXXXXXXXXXXXALSKQPSMGQMSINVED 343
           FLVA IRKAI+DV SGNTVAFATGKV                 ALS    MG  S+N+E+
Sbjct: 486 FLVAHIRKAIADVGSGNTVAFATGKVARKKEREAAAAQKEARIALSNLSLMGPTSLNIEE 545

Query: 342 KYKYMIAPTMAKKEGSADDAWDD 274
           KY++M++P+  K EG+ADDAWDD
Sbjct: 546 KYRFMMSPSSIKTEGAADDAWDD 568


>ref|XP_002326066.1| predicted protein [Populus trichocarpa] gi|222862941|gb|EEF00448.1|
           predicted protein [Populus trichocarpa]
          Length = 530

 Score = 85.1 bits (209), Expect = 6e-15
 Identities = 46/83 (55%), Positives = 55/83 (66%)
 Frame = -2

Query: 522 FLVAQIRKAISDVQSGNTVAFATGKVXXXXXXXXXXXXXXXXXALSKQPSMGQMSINVED 343
           FLVAQI+KAI+DV+SGNTVAFATGK                  ALSK   MG   IN+ED
Sbjct: 450 FLVAQIKKAIADVESGNTVAFATGKAARRKEREAAASQKEARNALSKV--MGSTCINIED 507

Query: 342 KYKYMIAPTMAKKEGSADDAWDD 274
           KY++MIAP++   EG+AD AWDD
Sbjct: 508 KYRFMIAPSVITSEGAADSAWDD 530


>ref|XP_002523955.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223536802|gb|EEF38442.1| dead box ATP-dependent RNA
           helicase, putative [Ricinus communis]
          Length = 564

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 46/83 (55%), Positives = 54/83 (65%)
 Frame = -2

Query: 522 FLVAQIRKAISDVQSGNTVAFATGKVXXXXXXXXXXXXXXXXXALSKQPSMGQMSINVED 343
           FLVAQI+KAI+DV+SGNTVAFATGKV                  LSK   +G  SIN+ED
Sbjct: 484 FLVAQIKKAIADVKSGNTVAFATGKVARRKEREAAASQKEARNDLSK--LLGPTSINIED 541

Query: 342 KYKYMIAPTMAKKEGSADDAWDD 274
           KY++MIA +  K EG AD AWDD
Sbjct: 542 KYRFMIASSNTKGEGVADSAWDD 564


>ref|XP_002319430.1| predicted protein [Populus trichocarpa] gi|222857806|gb|EEE95353.1|
           predicted protein [Populus trichocarpa]
          Length = 559

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 43/85 (50%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = -2

Query: 522 FLVAQIRKAISDVQSGNTVAFATGKVXXXXXXXXXXXXXXXXXALSKQPSM--GQMSINV 349
           FLVAQI+KAI+DV+SGNTVAFATGK                       PS   G   IN+
Sbjct: 478 FLVAQIKKAIADVESGNTVAFATGKTARRKEREAAAALHKEAR---NDPSKVTGPACINI 534

Query: 348 EDKYKYMIAPTMAKKEGSADDAWDD 274
           EDKY++M+AP++ K EG+AD AWDD
Sbjct: 535 EDKYRFMMAPSIIKSEGAADSAWDD 559


>ref|XP_001786160.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162662029|gb|EDQ49028.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 377

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
 Frame = -2

Query: 522 FLVAQIRKAISDVQSGNTVAFATGKVXXXXXXXXXXXXXXXXXALSKQPSMGQMSINVED 343
           FLVAQIR+AI++ +SGNT+AFATGK                         +G  ++ V+D
Sbjct: 293 FLVAQIRRAITEAESGNTMAFATGKAARRKEREQAAAFREGRMTPLGVAQVGATTVRVDD 352

Query: 342 KYKYMIAPTM--AKKEGSADDAWDD 274
           KYK+M++ T    K EG+ADDAW+D
Sbjct: 353 KYKHMLSATADPKKGEGAADDAWED 377


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