BLASTX nr result

ID: Panax21_contig00023453 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00023453
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265730.2| PREDICTED: nuclear-pore anchor-like [Vitis v...   150   8e-35
emb|CBI24130.3| unnamed protein product [Vitis vinifera]              150   8e-35
ref|XP_002312219.1| predicted protein [Populus trichocarpa] gi|2...   150   8e-35
ref|XP_002518821.1| Nucleoprotein TPR, putative [Ricinus communi...   140   8e-32
ref|NP_001185436.1| nucleoprotein TPR [Arabidopsis thaliana] gi|...   139   2e-31

>ref|XP_002265730.2| PREDICTED: nuclear-pore anchor-like [Vitis vinifera]
          Length = 2087

 Score =  150 bits (380), Expect = 8e-35
 Identities = 79/115 (68%), Positives = 88/115 (76%)
 Frame = -3

Query: 347 QRLSELAQLQADKHQIYLQSIGKDGEIERLSMEASEFHKSKRQLLELLEQKDIEISEKNV 168
           +RLSELAQ+QA+KHQ++L+SI KDGEIERLS E SE HKSKRQLLE LE KD+EISEKN 
Sbjct: 83  ERLSELAQIQAEKHQLHLKSIEKDGEIERLSTEESELHKSKRQLLEFLEHKDLEISEKNA 142

Query: 167 TIKSYLDKIVNLTDNXXXXXXXXXXXXXXXXRSIGSCARLSQEKELIERHNVWLN 3
           TIKSYLDKIVN+TD                 RS  +CARL QEKELIERHNVWLN
Sbjct: 143 TIKSYLDKIVNMTDTAALREARLSDAEAELSRSKAACARLLQEKELIERHNVWLN 197


>emb|CBI24130.3| unnamed protein product [Vitis vinifera]
          Length = 2088

 Score =  150 bits (380), Expect = 8e-35
 Identities = 79/115 (68%), Positives = 88/115 (76%)
 Frame = -3

Query: 347 QRLSELAQLQADKHQIYLQSIGKDGEIERLSMEASEFHKSKRQLLELLEQKDIEISEKNV 168
           +RLSELAQ+QA+KHQ++L+SI KDGEIERLS E SE HKSKRQLLE LE KD+EISEKN 
Sbjct: 83  ERLSELAQIQAEKHQLHLKSIEKDGEIERLSTEESELHKSKRQLLEFLEHKDLEISEKNA 142

Query: 167 TIKSYLDKIVNLTDNXXXXXXXXXXXXXXXXRSIGSCARLSQEKELIERHNVWLN 3
           TIKSYLDKIVN+TD                 RS  +CARL QEKELIERHNVWLN
Sbjct: 143 TIKSYLDKIVNMTDTAALREARLSDAEAELSRSKAACARLLQEKELIERHNVWLN 197


>ref|XP_002312219.1| predicted protein [Populus trichocarpa] gi|222852039|gb|EEE89586.1|
           predicted protein [Populus trichocarpa]
          Length = 2052

 Score =  150 bits (380), Expect = 8e-35
 Identities = 78/116 (67%), Positives = 85/116 (73%)
 Frame = -3

Query: 350 DQRLSELAQLQADKHQIYLQSIGKDGEIERLSMEASEFHKSKRQLLELLEQKDIEISEKN 171
           D RLSELAQ QA KHQ++LQSIGKDGEIERL+ME SE HKSKRQL+EL+EQKD+EISEKN
Sbjct: 82  DDRLSELAQAQAQKHQLHLQSIGKDGEIERLTMEVSELHKSKRQLIELVEQKDLEISEKN 141

Query: 170 VTIKSYLDKIVNLTDNXXXXXXXXXXXXXXXXRSIGSCARLSQEKELIERHNVWLN 3
            T   YLDKIVNLTD                 RS  +C RL QEKELIERHN WLN
Sbjct: 142 ATFNGYLDKIVNLTDRAANREARISELEAELARSQATCTRLLQEKELIERHNAWLN 197


>ref|XP_002518821.1| Nucleoprotein TPR, putative [Ricinus communis]
           gi|223541994|gb|EEF43539.1| Nucleoprotein TPR, putative
           [Ricinus communis]
          Length = 2095

 Score =  140 bits (354), Expect = 8e-32
 Identities = 73/116 (62%), Positives = 84/116 (72%)
 Frame = -3

Query: 350 DQRLSELAQLQADKHQIYLQSIGKDGEIERLSMEASEFHKSKRQLLELLEQKDIEISEKN 171
           D RLSELA++QA KHQ++LQSI KDGE+ERL+ME SE HKSKRQL+EL+E+KD EISEKN
Sbjct: 82  DDRLSELAEVQAQKHQLHLQSIAKDGEVERLTMEVSEVHKSKRQLIELVERKDSEISEKN 141

Query: 170 VTIKSYLDKIVNLTDNXXXXXXXXXXXXXXXXRSIGSCARLSQEKELIERHNVWLN 3
           + I  YLDKIV LTD                 R   + ARLSQEKELIERHN WLN
Sbjct: 142 IIISGYLDKIVTLTDKAAQKETRLSEVEAELARERANSARLSQEKELIERHNAWLN 197


>ref|NP_001185436.1| nucleoprotein TPR [Arabidopsis thaliana]
           gi|332198107|gb|AEE36228.1| nucleoprotein TPR
           [Arabidopsis thaliana]
          Length = 2115

 Score =  139 bits (351), Expect = 2e-31
 Identities = 75/116 (64%), Positives = 83/116 (71%)
 Frame = -3

Query: 350 DQRLSELAQLQADKHQIYLQSIGKDGEIERLSMEASEFHKSKRQLLELLEQKDIEISEKN 171
           D RL+ELAQ QA KHQ++LQSI KDGE+ER+S E SE HKSKRQL+ELLEQKD EISEKN
Sbjct: 83  DDRLAELAQSQAQKHQLHLQSIEKDGEVERMSTEMSELHKSKRQLMELLEQKDAEISEKN 142

Query: 170 VTIKSYLDKIVNLTDNXXXXXXXXXXXXXXXXRSIGSCARLSQEKELIERHNVWLN 3
            TIKSYLDKIV LTD                 RS   C+RLSQEKEL ERH  WL+
Sbjct: 143 STIKSYLDKIVKLTDTSSEKEARLAEATAELARSQAMCSRLSQEKELTERHAKWLD 198


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