BLASTX nr result

ID: Panax21_contig00023259 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00023259
         (501 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002304403.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07
ref|XP_002326789.1| predicted protein [Populus trichocarpa] gi|2...    59   4e-07
ref|XP_002510978.1| conserved hypothetical protein [Ricinus comm...    58   7e-07

>ref|XP_002304403.1| predicted protein [Populus trichocarpa] gi|222841835|gb|EEE79382.1|
           predicted protein [Populus trichocarpa]
          Length = 343

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/78 (37%), Positives = 42/78 (53%)
 Frame = +1

Query: 7   DDSKAGMDVLSWIFINTKAKIMDLIDKITKMVEELFLPPKSEKKIGKAADSFEEKLRTXX 186
           ++S   ++ + WIF NT+A+ M++ + ITK+V E F PP  EK      D FE+KLR+  
Sbjct: 266 EESNPALNFVKWIFDNTRARAMEIFETITKLVNEFFKPPAGEKTSAGTKDPFEDKLRSSF 325

Query: 187 XXXXXXXXXXXXTRASKA 240
                       TRA KA
Sbjct: 326 LLSIMVLLIVVVTRAQKA 343


>ref|XP_002326789.1| predicted protein [Populus trichocarpa] gi|222834111|gb|EEE72588.1|
           predicted protein [Populus trichocarpa]
          Length = 344

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 27/78 (34%), Positives = 44/78 (56%)
 Frame = +1

Query: 7   DDSKAGMDVLSWIFINTKAKIMDLIDKITKMVEELFLPPKSEKKIGKAADSFEEKLRTXX 186
           +++   ++ + WIF NT+A+++++I+ +TK+V ELF PP  EK      D FE+KLR+  
Sbjct: 267 EETNPALNFVKWIFDNTRARVVEVIETVTKLVNELFKPPADEKTSAGDKDPFEDKLRSSF 326

Query: 187 XXXXXXXXXXXXTRASKA 240
                       TR  KA
Sbjct: 327 LLSIMVLLIVVVTRVQKA 344


>ref|XP_002510978.1| conserved hypothetical protein [Ricinus communis]
           gi|223550093|gb|EEF51580.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 342

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/79 (39%), Positives = 40/79 (50%)
 Frame = +1

Query: 4   SDDSKAGMDVLSWIFINTKAKIMDLIDKITKMVEELFLPPKSEKKIGKAADSFEEKLRTX 183
           S DS    + + WIF NTKAK M+++DKIT ++  LF  P  E       D FEE+LRT 
Sbjct: 264 SHDSNPATNAVKWIFQNTKAKFMEVLDKITMLMNVLFKAPDVENNATGTVDPFEERLRTS 323

Query: 184 XXXXXXXXXXXXXTRASKA 240
                        TRA +A
Sbjct: 324 FLLSVVVLLVVVVTRAHRA 342


Top