BLASTX nr result

ID: Panax21_contig00023235 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00023235
         (755 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24866.3| unnamed protein product [Vitis vinifera]              275   6e-72
ref|XP_003633575.1| PREDICTED: uncharacterized protein LOC100855...   275   6e-72
ref|XP_002513178.1| poly-A binding protein, putative [Ricinus co...   216   3e-54
ref|XP_002313291.1| predicted protein [Populus trichocarpa] gi|2...   216   5e-54
ref|XP_002299951.1| predicted protein [Populus trichocarpa] gi|2...   214   2e-53

>emb|CBI24866.3| unnamed protein product [Vitis vinifera]
          Length = 694

 Score =  275 bits (704), Expect = 6e-72
 Identities = 156/255 (61%), Positives = 181/255 (70%), Gaps = 4/255 (1%)
 Frame = -1

Query: 755  DVTGITDNMAEFREAPVEAVEEYRDFDYIAEETQPTYLQQSDYSERYARNRTVIESDAGI 576
            D++ ++D  A FRE   E    Y DF  I E+T+ T+LQ+S YSE YA N T++ES+ G+
Sbjct: 299  DLSEVSDQQAGFRETGTED-GGYEDFKQIPEKTRSTHLQRSAYSEHYAGNVTMLESETGL 357

Query: 575  ASDFVSDNEVYEGGNILGCRAMDVSRTGTSGGNKNDDSLMVQYSVSNKADESTRKPWK-D 399
            ASD  SDNE Y+  N++G R MDVS++GT+GGNK DDSLMVQYSV+  ADE  R     D
Sbjct: 358  ASDSASDNEGYDDVNLMGRRIMDVSQSGTTGGNKGDDSLMVQYSVAKNADEGMRTMRSID 417

Query: 398  QDQPSA-ANTSSKIVNISVNVNTWKPP-HYQETREVSDVDGQKFVQESEAGADKSGFPLM 225
            Q QPSA ANTS KIVNISVNVNTWKPP HYQ  REV +VDGQK VQ +E G  KSG  LM
Sbjct: 418  QGQPSAVANTSRKIVNISVNVNTWKPPAHYQGPREVEEVDGQKPVQGNETGTGKSGVRLM 477

Query: 224  K-EXXXXXXXXXNAVPATDGQRESQKALSSTAGLYSSGRPAEDTDSRTIFVSNVHFAATK 48
            K           NA PA D QRESQK   S  G YS+GRP ED DSRTIFV+NVHFAATK
Sbjct: 478  KANGNPVSVGNGNAKPAVDTQRESQKMQPSAPGSYSTGRPLEDADSRTIFVNNVHFAATK 537

Query: 47   DSLSRHFNKFGDVLK 3
            DSLSRHFNKFG+V+K
Sbjct: 538  DSLSRHFNKFGEVVK 552


>ref|XP_003633575.1| PREDICTED: uncharacterized protein LOC100855398 [Vitis vinifera]
          Length = 700

 Score =  275 bits (704), Expect = 6e-72
 Identities = 156/255 (61%), Positives = 181/255 (70%), Gaps = 4/255 (1%)
 Frame = -1

Query: 755  DVTGITDNMAEFREAPVEAVEEYRDFDYIAEETQPTYLQQSDYSERYARNRTVIESDAGI 576
            D++ ++D  A FRE   E    Y DF  I E+T+ T+LQ+S YSE YA N T++ES+ G+
Sbjct: 305  DLSEVSDQQAGFRETGTED-GGYEDFKQIPEKTRSTHLQRSAYSEHYAGNVTMLESETGL 363

Query: 575  ASDFVSDNEVYEGGNILGCRAMDVSRTGTSGGNKNDDSLMVQYSVSNKADESTRKPWK-D 399
            ASD  SDNE Y+  N++G R MDVS++GT+GGNK DDSLMVQYSV+  ADE  R     D
Sbjct: 364  ASDSASDNEGYDDVNLMGRRIMDVSQSGTTGGNKGDDSLMVQYSVAKNADEGMRTMRSID 423

Query: 398  QDQPSA-ANTSSKIVNISVNVNTWKPP-HYQETREVSDVDGQKFVQESEAGADKSGFPLM 225
            Q QPSA ANTS KIVNISVNVNTWKPP HYQ  REV +VDGQK VQ +E G  KSG  LM
Sbjct: 424  QGQPSAVANTSRKIVNISVNVNTWKPPAHYQGPREVEEVDGQKPVQGNETGTGKSGVRLM 483

Query: 224  K-EXXXXXXXXXNAVPATDGQRESQKALSSTAGLYSSGRPAEDTDSRTIFVSNVHFAATK 48
            K           NA PA D QRESQK   S  G YS+GRP ED DSRTIFV+NVHFAATK
Sbjct: 484  KANGNPVSVGNGNAKPAVDTQRESQKMQPSAPGSYSTGRPLEDADSRTIFVNNVHFAATK 543

Query: 47   DSLSRHFNKFGDVLK 3
            DSLSRHFNKFG+V+K
Sbjct: 544  DSLSRHFNKFGEVVK 558


>ref|XP_002513178.1| poly-A binding protein, putative [Ricinus communis]
           gi|223547676|gb|EEF49169.1| poly-A binding protein,
           putative [Ricinus communis]
          Length = 514

 Score =  216 bits (551), Expect = 3e-54
 Identities = 118/247 (47%), Positives = 157/247 (63%), Gaps = 1/247 (0%)
 Frame = -1

Query: 740 TDNMAEFREAPVEAVEEYRDFDYIAEETQPTYLQQSDYSERYARNRTVIESDAGIASDFV 561
           TD + +     VE+ E Y + +   ++T+  YLQ+      +A N  ++ES+ G+  D +
Sbjct: 125 TDQIRDISHDAVES-EVYEEVNPNPDQTESFYLQRY---AGHAGNIGIMESETGLVGDSM 180

Query: 560 SDNEVYEGGNILGCRAMDVSRTGTSGGNKNDDSLMVQYSVSNKADESTRKPWKDQDQPSA 381
            DNEVY+  +++G   MDVS TGTSGG+K +DSLMVQYSV   AD    +  +++D+   
Sbjct: 181 FDNEVYDDDDVMGHGVMDVSETGTSGGSKREDSLMVQYSVGRSADNDDMRTTRNKDRDQP 240

Query: 380 ANTSSKIVNISVNVNTWKPPHYQETREVSDVDGQKFVQESEAGADKSGFPLMKE-XXXXX 204
            + +  +VNI +N+NTWKPPH QE+R   ++     VQE++A   KSG  LMKE      
Sbjct: 241 VSAAKAVVNIPMNLNTWKPPHCQESRRFPEMGNWNSVQENKADTTKSGARLMKENNNIVM 300

Query: 203 XXXXNAVPATDGQRESQKALSSTAGLYSSGRPAEDTDSRTIFVSNVHFAATKDSLSRHFN 24
               NA P  D  +ESQK L S  G Y++GRP ED DSRTIFVSNVHFAATKDSLSRHFN
Sbjct: 301 VGNGNAKPVADMHKESQKPLQSAPGSYATGRPLEDADSRTIFVSNVHFAATKDSLSRHFN 360

Query: 23  KFGDVLK 3
           KFGDVLK
Sbjct: 361 KFGDVLK 367


>ref|XP_002313291.1| predicted protein [Populus trichocarpa] gi|222849699|gb|EEE87246.1|
            predicted protein [Populus trichocarpa]
          Length = 762

 Score =  216 bits (549), Expect = 5e-54
 Identities = 127/252 (50%), Positives = 164/252 (65%), Gaps = 1/252 (0%)
 Frame = -1

Query: 755  DVTGITDNMAEFREAPVEAVEEYRDFDYIAEETQPTYLQQSDYSERYARNRTVIESDAGI 576
            D +  T+ + EFR+A VE  +EY + + I E+    Y Q+S +   +A    ++E +AG+
Sbjct: 340  DASLTTEQVTEFRDAAVED-DEYEELNGIQEQNHSNYPQRSKFCG-HAGAMNMMEHEAGL 397

Query: 575  ASDFVSDNEVYEGGNILGCRAMDVSRTGTSGGNKNDDSLMVQYSVSNKADESTRKPWKDQ 396
             SD +SDNE Y+  N++  R MDVS TGTS G+K +D+LM +Y+++           KDQ
Sbjct: 398  TSDLMSDNEGYDDANVVDHRVMDVSHTGTSYGSKGEDALMSKYNLA-----------KDQ 446

Query: 395  DQPSAANTSSKIVNISVNVNTWKPPHYQETREVSDVDGQKFVQESEAGADKSGFPLMKEX 216
               SAANTS KIVNISVNVNTW+PPHYQE R+ + +D QK VQ +E  A + G  LMKE 
Sbjct: 447  ---SAANTSLKIVNISVNVNTWRPPHYQEPRDAA-MDNQKSVQNNEGNAGRFGAKLMKEV 502

Query: 215  XXXXXXXXN-AVPATDGQRESQKALSSTAGLYSSGRPAEDTDSRTIFVSNVHFAATKDSL 39
                      A PA   Q+E QK  SS +G Y++G P ED DSRTIFVSNVHFAATKDSL
Sbjct: 503  SKPVSVGNGNAKPAGGIQQEPQKPPSSASGPYTAGCPLEDADSRTIFVSNVHFAATKDSL 562

Query: 38   SRHFNKFGDVLK 3
            SRHFNKFG+VLK
Sbjct: 563  SRHFNKFGEVLK 574


>ref|XP_002299951.1| predicted protein [Populus trichocarpa] gi|222847209|gb|EEE84756.1|
            predicted protein [Populus trichocarpa]
          Length = 678

 Score =  214 bits (544), Expect = 2e-53
 Identities = 133/253 (52%), Positives = 163/253 (64%), Gaps = 2/253 (0%)
 Frame = -1

Query: 755  DVTGITDNMAEFREAPVEAVEEYRDFDYIAEETQPTYLQQSDYSERYARNRTVIESDAGI 576
            D + IT+ +AEFR+  VE  +EY DF+ I E+T   Y ++S Y  R A    +   +AG+
Sbjct: 300  DASLITEQVAEFRDHAVED-DEYEDFNEIQEQTHSNYPRRSKYCGR-AGTTNMTGHEAGL 357

Query: 575  ASDFVSDNEVYEGGNILGCRAMDVSRTGTSGGNKNDDSLMVQYSVSNKADESTRKPWKDQ 396
             +  +SD EVY+  + +G R MDVS+TGT  G+K  DSLM  Y+V+           KDQ
Sbjct: 358  TTGLMSDYEVYDDSSPVGHRVMDVSQTGTYLGSKGKDSLMSNYNVA-----------KDQ 406

Query: 395  DQP-SAANTSSKIVNISVNVNTWKPPHYQETREVSDVDGQKFVQESEAGADKSGFPLMKE 219
            DQ  SAANTS KIVNISVNVNTW+PPHYQE+R+   +D  K VQ++EA A   G  LMKE
Sbjct: 407  DQSVSAANTSRKIVNISVNVNTWRPPHYQESRDTV-MDNLKSVQDNEADAGSFGAQLMKE 465

Query: 218  XXXXXXXXXNAV-PATDGQRESQKALSSTAGLYSSGRPAEDTDSRTIFVSNVHFAATKDS 42
                       V PA D Q+E QK  SS     +SGRP ED DSRTIFVSNVHFAATKDS
Sbjct: 466  ISNPVSVSNGNVKPAGDIQQEPQKPPSS-----ASGRPLEDADSRTIFVSNVHFAATKDS 520

Query: 41   LSRHFNKFGDVLK 3
            LSRHFNKFG+VLK
Sbjct: 521  LSRHFNKFGEVLK 533


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