BLASTX nr result

ID: Panax21_contig00022539 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00022539
         (1829 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containi...   401   e-109
emb|CBI17228.3| unnamed protein product [Vitis vinifera]              401   e-109
ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containi...   352   1e-94
ref|XP_002300166.1| predicted protein [Populus trichocarpa] gi|2...   338   4e-90
ref|NP_171976.1| pentatricopeptide repeat-containing protein [Ar...   297   6e-78

>ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein At1g04840-like
            [Vitis vinifera]
          Length = 677

 Score =  401 bits (1030), Expect = e-109
 Identities = 188/271 (69%), Positives = 221/271 (81%)
 Frame = +1

Query: 4    VVFLAILTACSHAGQVEWGLHFFDCMKLDFSIKPTIKHYAVVVDLFGRAGRLDEAFSFIQ 183
            V+FLAILTACSH+G V+ GL+FF+ M+LD+SI+PT+KHY ++VDL GRAGRLDEA SFIQ
Sbjct: 407  VIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQ 466

Query: 184  NMPLEPDLVIWGALFCACRAHKNIKMAEYASQRLLELETKHPGSYVFLSNIYAGVGRWED 363
            +MP+ PD VIWGALFCACRAHKNI+MAE  +++LL+LE KHPGSYVFLSN+YA VGRWED
Sbjct: 467  SMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWED 526

Query: 364  VERVRTSMKDTGLEKEPGWSYIEVGGQVHSFVAGDRSHALTEELYMKLEEITFSAREQGY 543
            VERVRT MK+ G+EK+PGWSYIEV GQVHSFVAGD +H   EE+ +KLEEIT SA+++GY
Sbjct: 527  VERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGY 586

Query: 544  MPXXXXXXXXXXXXXXXXXXXXXXXXXALGFALISTAPGTTIRIVKNLRVCGDCHSMMKF 723
            MP                         AL F LISTAPG+TIRIVKNLRVCGDCHSMMK+
Sbjct: 587  MPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKY 646

Query: 724  ISKMSQREILLRDIKRFHHFKDGTCSCQDYW 816
             SK+S+REI+LRDIKRFHHFKDGTCSC DYW
Sbjct: 647  ASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677


>emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  401 bits (1030), Expect = e-109
 Identities = 188/271 (69%), Positives = 221/271 (81%)
 Frame = +1

Query: 4    VVFLAILTACSHAGQVEWGLHFFDCMKLDFSIKPTIKHYAVVVDLFGRAGRLDEAFSFIQ 183
            V+FLAILTACSH+G V+ GL+FF+ M+LD+SI+PT+KHY ++VDL GRAGRLDEA SFIQ
Sbjct: 320  VIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQ 379

Query: 184  NMPLEPDLVIWGALFCACRAHKNIKMAEYASQRLLELETKHPGSYVFLSNIYAGVGRWED 363
            +MP+ PD VIWGALFCACRAHKNI+MAE  +++LL+LE KHPGSYVFLSN+YA VGRWED
Sbjct: 380  SMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWED 439

Query: 364  VERVRTSMKDTGLEKEPGWSYIEVGGQVHSFVAGDRSHALTEELYMKLEEITFSAREQGY 543
            VERVRT MK+ G+EK+PGWSYIEV GQVHSFVAGD +H   EE+ +KLEEIT SA+++GY
Sbjct: 440  VERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGY 499

Query: 544  MPXXXXXXXXXXXXXXXXXXXXXXXXXALGFALISTAPGTTIRIVKNLRVCGDCHSMMKF 723
            MP                         AL F LISTAPG+TIRIVKNLRVCGDCHSMMK+
Sbjct: 500  MPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKY 559

Query: 724  ISKMSQREILLRDIKRFHHFKDGTCSCQDYW 816
             SK+S+REI+LRDIKRFHHFKDGTCSC DYW
Sbjct: 560  ASKLSRREIILRDIKRFHHFKDGTCSCGDYW 590


>ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein At1g04840-like
            [Cucumis sativus] gi|449505311|ref|XP_004162432.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  352 bits (904), Expect = 1e-94
 Identities = 165/271 (60%), Positives = 200/271 (73%)
 Frame = +1

Query: 4    VVFLAILTACSHAGQVEWGLHFFDCMKLDFSIKPTIKHYAVVVDLFGRAGRLDEAFSFIQ 183
            VVFLA+L ACSH+GQV  GL FFD M+  + I+P++KHY +VVD+ GRAGRLDEA  FI+
Sbjct: 409  VVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIR 468

Query: 184  NMPLEPDLVIWGALFCACRAHKNIKMAEYASQRLLELETKHPGSYVFLSNIYAGVGRWED 363
             MP+ PD V+WGALFCACR HKN++MAE AS++LL+LE KHPGSYVFLSN YA VGRW+D
Sbjct: 469  AMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDD 528

Query: 364  VERVRTSMKDTGLEKEPGWSYIEVGGQVHSFVAGDRSHALTEELYMKLEEITFSAREQGY 543
             ERVR SM+D G  K+PGWS+IEV  ++H FVAGD +H    E+Y KL+EI+ SARE+GY
Sbjct: 529  AERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGY 588

Query: 544  MPXXXXXXXXXXXXXXXXXXXXXXXXXALGFALISTAPGTTIRIVKNLRVCGDCHSMMKF 723
                                       AL F ++ST PGTT+RIVKNLRVC DCHS MK+
Sbjct: 589  TKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKY 648

Query: 724  ISKMSQREILLRDIKRFHHFKDGTCSCQDYW 816
             SKMS+REI+LRD+KRFHHF DG CSC DYW
Sbjct: 649  ASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679


>ref|XP_002300166.1| predicted protein [Populus trichocarpa] gi|222847424|gb|EEE84971.1|
            predicted protein [Populus trichocarpa]
          Length = 719

 Score =  338 bits (866), Expect = 4e-90
 Identities = 157/271 (57%), Positives = 201/271 (74%)
 Frame = +1

Query: 4    VVFLAILTACSHAGQVEWGLHFFDCMKLDFSIKPTIKHYAVVVDLFGRAGRLDEAFSFIQ 183
            VVFLA+LTAC H+GQV+ GL+FFD M+LD+ I+P++KHY ++VD+ GR+G+L EA  FI+
Sbjct: 449  VVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIE 508

Query: 184  NMPLEPDLVIWGALFCACRAHKNIKMAEYASQRLLELETKHPGSYVFLSNIYAGVGRWED 363
             MP+ PD VIWGALFCACRAHK  KMA++A  +LL+LE  H G+Y+FLSN YA +G+WED
Sbjct: 509  RMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWED 568

Query: 364  VERVRTSMKDTGLEKEPGWSYIEVGGQVHSFVAGDRSHALTEELYMKLEEITFSAREQGY 543
             ERVR  M++ G+ K  GWS IEV GQVH FV+GD  H  ++ + +KLEEI   A +QGY
Sbjct: 569  AERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGY 628

Query: 544  MPXXXXXXXXXXXXXXXXXXXXXXXXXALGFALISTAPGTTIRIVKNLRVCGDCHSMMKF 723
            +P                         AL FALI T+PG TIRIVKNL+VCGDCHS+MK+
Sbjct: 629  IPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKY 688

Query: 724  ISKMSQREILLRDIKRFHHFKDGTCSCQDYW 816
             SK+SQREI+LRD+KRFHHFKDG+CSC+D+W
Sbjct: 689  ASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719


>ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g04840 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17
            [Arabidopsis thaliana] gi|332189629|gb|AEE27750.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 665

 Score =  297 bits (761), Expect = 6e-78
 Identities = 141/271 (52%), Positives = 189/271 (69%)
 Frame = +1

Query: 4    VVFLAILTACSHAGQVEWGLHFFDCMKLDFSIKPTIKHYAVVVDLFGRAGRLDEAFSFIQ 183
            VVFLA+LTAC ++ +V+ GL+FFD M+LD++I+PT+KHY +VVDL GRAG+L+EA   ++
Sbjct: 395  VVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVE 454

Query: 184  NMPLEPDLVIWGALFCACRAHKNIKMAEYASQRLLELETKHPGSYVFLSNIYAGVGRWED 363
            NMP+ PDL  W AL+ AC+AHK  + AE  SQ LLEL+ +  GSY+FL   +A  G  +D
Sbjct: 455  NMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNIQD 514

Query: 364  VERVRTSMKDTGLEKEPGWSYIEVGGQVHSFVAGDRSHALTEELYMKLEEITFSAREQGY 543
            VE+ R S++    E+  GWSYIE+ GQ++ F AGD SH LT+E+ +KL+EI   A ++GY
Sbjct: 515  VEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQKGY 574

Query: 544  MPXXXXXXXXXXXXXXXXXXXXXXXXXALGFALISTAPGTTIRIVKNLRVCGDCHSMMKF 723
             P                         AL    + TAPGTTIRI+KNLR+CGDCHS+MK+
Sbjct: 575  NPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKY 634

Query: 724  ISKMSQREILLRDIKRFHHFKDGTCSCQDYW 816
            +SK+SQR+ILLRD ++FHHFKDG CSC DYW
Sbjct: 635  VSKISQRDILLRDARQFHHFKDGRCSCGDYW 665


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