BLASTX nr result

ID: Panax21_contig00022442 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00022442
         (484 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu...   107   1e-21
ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268...   103   1e-20
emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera]   103   1e-20
ref|XP_002312652.1| predicted protein [Populus trichocarpa] gi|2...   102   4e-20
ref|XP_002315647.1| predicted protein [Populus trichocarpa] gi|2...    96   4e-18

>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
           gi|223546091|gb|EEF47594.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 644

 Score =  107 bits (266), Expect = 1e-21
 Identities = 60/115 (52%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
 Frame = -3

Query: 482 GETSHDKGVRSNATASREKEQGSERDWLGNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 303
           GE +H+KG RS+A ASREKE+ SERDW GN                              
Sbjct: 529 GEVNHEKGARSSA-ASREKERASERDWSGNSDRRHRDDREHDWDRSEREHKEHRYREEKE 587

Query: 302 D---PLQKERDLGYEDNWDRGQASSRSHSRSRVMPEEGHRSRLRDADYGKRRRLP 147
                 Q+ERD GYED+WDRGQ+SSRS SRSR +PEE +RSR RDADYGKRRRLP
Sbjct: 588 SYRDHRQRERDSGYEDDWDRGQSSSRSRSRSRAVPEEDYRSRSRDADYGKRRRLP 642


>ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268141 isoform 1 [Vitis
           vinifera] gi|359473133|ref|XP_003631251.1| PREDICTED:
           uncharacterized protein LOC100268141 isoform 2 [Vitis
           vinifera]
          Length = 647

 Score =  103 bits (258), Expect = 1e-20
 Identities = 58/112 (51%), Positives = 66/112 (58%)
 Frame = -3

Query: 482 GETSHDKGVRSNATASREKEQGSERDWLGNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 303
           GE +H+K  RSN TASREKE+GSERDW GN                              
Sbjct: 535 GEVNHEKVGRSN-TASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEKDGYR 593

Query: 302 DPLQKERDLGYEDNWDRGQASSRSHSRSRVMPEEGHRSRLRDADYGKRRRLP 147
           D  Q+ERD   ED+WDRGQ+SSRS SRSR + +E HRSR RD DYGKRRRLP
Sbjct: 594 DHRQRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGDYGKRRRLP 645


>emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera]
          Length = 168

 Score =  103 bits (258), Expect = 1e-20
 Identities = 58/112 (51%), Positives = 66/112 (58%)
 Frame = -3

Query: 482 GETSHDKGVRSNATASREKEQGSERDWLGNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 303
           GE +H+K  RSN TASREKE+GSERDW GN                              
Sbjct: 56  GEVNHEKVGRSN-TASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEKDGYR 114

Query: 302 DPLQKERDLGYEDNWDRGQASSRSHSRSRVMPEEGHRSRLRDADYGKRRRLP 147
           D  Q+ERD   ED+WDRGQ+SSRS SRSR + +E HRSR RD DYGKRRRLP
Sbjct: 115 DHRQRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGDYGKRRRLP 166


>ref|XP_002312652.1| predicted protein [Populus trichocarpa] gi|222852472|gb|EEE90019.1|
           predicted protein [Populus trichocarpa]
          Length = 619

 Score =  102 bits (253), Expect = 4e-20
 Identities = 56/112 (50%), Positives = 65/112 (58%)
 Frame = -3

Query: 482 GETSHDKGVRSNATASREKEQGSERDWLGNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 303
           GE +H+KG RS+  ASREKE+GSERDW GN                              
Sbjct: 507 GEGNHEKGARSSG-ASREKERGSERDWSGNSDRRHRDEREQDWDRPEREHRYKEEKDSYR 565

Query: 302 DPLQKERDLGYEDNWDRGQASSRSHSRSRVMPEEGHRSRLRDADYGKRRRLP 147
              Q+ERD GYED+ DRG +SSR+ SRSR  PEE +RSR RD DYGKRRRLP
Sbjct: 566 GHRQRERDSGYEDDRDRGHSSSRARSRSRAAPEEDYRSRTRDVDYGKRRRLP 617


>ref|XP_002315647.1| predicted protein [Populus trichocarpa] gi|222864687|gb|EEF01818.1|
           predicted protein [Populus trichocarpa]
          Length = 573

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 54/112 (48%), Positives = 63/112 (56%)
 Frame = -3

Query: 482 GETSHDKGVRSNATASREKEQGSERDWLGNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 303
           GE +H+KG RS+  ASREKE+ SERDW GN                              
Sbjct: 461 GEGNHEKGARSSG-ASREKERVSERDWSGNSDRRHRDEREQDWDRSEREPKYREEKDTYR 519

Query: 302 DPLQKERDLGYEDNWDRGQASSRSHSRSRVMPEEGHRSRLRDADYGKRRRLP 147
              Q+ERD GYED+ DRG +SSR+ SRSR  PEE +RSR RD DYGKRRR P
Sbjct: 520 GHRQRERDSGYEDDRDRGHSSSRARSRSRAAPEEDYRSRSRDVDYGKRRRPP 571


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