BLASTX nr result

ID: Panax21_contig00022293 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00022293
         (579 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511863.1| CRP, putative [Ricinus communis] gi|22354904...    78   1e-12
ref|XP_002274479.2| PREDICTED: uncharacterized protein LOC100263...    77   2e-12
ref|XP_002320796.1| predicted protein [Populus trichocarpa] gi|2...    77   2e-12
ref|XP_004155825.1| PREDICTED: mediator of RNA polymerase II tra...    74   2e-11
ref|XP_004133865.1| PREDICTED: mediator of RNA polymerase II tra...    74   2e-11

>ref|XP_002511863.1| CRP, putative [Ricinus communis] gi|223549043|gb|EEF50532.1| CRP,
            putative [Ricinus communis]
          Length = 2264

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 49/110 (44%), Positives = 55/110 (50%)
 Frame = -1

Query: 558  PPQRNPATSLRTAANGPGKNKPSPLLQDLDMEIDPWTLLEDGAESXXXXXXXXXXXXXXX 379
            PPQ+NP    RT  N PG++K  PL QD DMEIDPWTLLEDG  S               
Sbjct: 2176 PPQKNPLPLARTT-NVPGRSKSLPLQQDNDMEIDPWTLLEDGTGS--------------- 2219

Query: 378  XXXXXXXXXXXXXXXXXXXXXXXXASTLLKGAVRVRRMDLTYIGSVDEDS 229
                                    AS  LKGAVRVRR DLTYIG+VD+D+
Sbjct: 2220 -----GPSSSNAAVVSGGDHANLRASAWLKGAVRVRRTDLTYIGAVDDDN 2264


>ref|XP_002274479.2| PREDICTED: uncharacterized protein LOC100263628 [Vitis vinifera]
          Length = 2272

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 49/116 (42%), Positives = 58/116 (50%)
 Frame = -1

Query: 576  HPGNINPPQRNPATSLRTAANGPGKNKPSPLLQDLDMEIDPWTLLEDGAESXXXXXXXXX 397
            HPGN N  QRN ++ +R     PGK K  PL QD D+EIDPWTLLEDGA +         
Sbjct: 2182 HPGNTNQSQRNSSSLVR-----PGKLKNMPLQQDHDIEIDPWTLLEDGAGA--------- 2227

Query: 396  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTLLKGAVRVRRMDLTYIGSVDEDS 229
                                          AS+ L+G VRVRR DLTYIG+VD+DS
Sbjct: 2228 -----------GPSSGNTAVIGSGDHANLRASSWLRGTVRVRRTDLTYIGAVDDDS 2272


>ref|XP_002320796.1| predicted protein [Populus trichocarpa] gi|222861569|gb|EEE99111.1|
           predicted protein [Populus trichocarpa]
          Length = 367

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 49/108 (45%), Positives = 55/108 (50%)
 Frame = -1

Query: 552 QRNPATSLRTAANGPGKNKPSPLLQDLDMEIDPWTLLEDGAESXXXXXXXXXXXXXXXXX 373
           Q+NPA   R+A N   K+KP PL QD DMEIDPWTLLEDG  S                 
Sbjct: 280 QKNPAPLARSANNISTKSKPLPLQQDGDMEIDPWTLLEDGTGS----------------- 322

Query: 372 XXXXXXXXXXXXXXXXXXXXXXASTLLKGAVRVRRMDLTYIGSVDEDS 229
                                 AS+ LKGAVRVRR DLTYIG+VD+DS
Sbjct: 323 ---GPSSSNISVIGSIDHANLRASSWLKGAVRVRRTDLTYIGAVDDDS 367


>ref|XP_004155825.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            12-like [Cucumis sativus]
          Length = 2254

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 47/114 (41%), Positives = 55/114 (48%)
 Frame = -1

Query: 570  GNINPPQRNPATSLRTAANGPGKNKPSPLLQDLDMEIDPWTLLEDGAESXXXXXXXXXXX 391
            GN + PQ +  +S R   + PGK+KP P  QD D EIDPW LLEDGA S           
Sbjct: 2161 GNSSMPQGSKISSPRVVPSAPGKSKPLPPQQDHDTEIDPWLLLEDGAGS----------- 2209

Query: 390  XXXXXXXXXXXXXXXXXXXXXXXXXXXXASTLLKGAVRVRRMDLTYIGSVDEDS 229
                                        AS  LKGAVRVRR DLTYIG++D+DS
Sbjct: 2210 ---------SQSSSNSAVIGSGEHANFRASYCLKGAVRVRRTDLTYIGAMDDDS 2254


>ref|XP_004133865.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            12-like [Cucumis sativus]
          Length = 2254

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 47/114 (41%), Positives = 55/114 (48%)
 Frame = -1

Query: 570  GNINPPQRNPATSLRTAANGPGKNKPSPLLQDLDMEIDPWTLLEDGAESXXXXXXXXXXX 391
            GN + PQ +  +S R   + PGK+KP P  QD D EIDPW LLEDGA S           
Sbjct: 2161 GNSSMPQGSKISSPRVVPSAPGKSKPLPPQQDHDTEIDPWLLLEDGAGS----------- 2209

Query: 390  XXXXXXXXXXXXXXXXXXXXXXXXXXXXASTLLKGAVRVRRMDLTYIGSVDEDS 229
                                        AS  LKGAVRVRR DLTYIG++D+DS
Sbjct: 2210 ---------SQSSSNSAVIGSGEHANFRASYCLKGAVRVRRTDLTYIGAMDDDS 2254


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