BLASTX nr result

ID: Panax21_contig00022281 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00022281
         (509 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001190953.1| Patched family protein [Arabidopsis thaliana...   214   5e-54
ref|NP_195548.6| Patched family protein [Arabidopsis thaliana] g...   214   5e-54
ref|XP_003545057.1| PREDICTED: niemann-Pick C1 protein-like [Gly...   211   5e-53
ref|XP_002312804.1| cholesterol transport protein [Populus trich...   208   3e-52
ref|XP_002279611.2| PREDICTED: niemann-Pick C1 protein [Vitis vi...   207   7e-52

>ref|NP_001190953.1| Patched family protein [Arabidopsis thaliana]
           gi|332661517|gb|AEE86917.1| Patched family protein
           [Arabidopsis thaliana]
          Length = 1297

 Score =  214 bits (546), Expect = 5e-54
 Identities = 107/170 (62%), Positives = 125/170 (73%), Gaps = 1/170 (0%)
 Frame = +1

Query: 1   LNLFCELSCSPRQSLFINVTSVSEVNGSLTVDGIDYFITDTFGEGLYDSCKEVKFGTMNT 180
           LNLFCELSCSP QSLFINVTSV+EV+G+LTVDGIDY ITDTFGEGLY+SCKEVKFGTMNT
Sbjct: 115 LNLFCELSCSPNQSLFINVTSVAEVSGNLTVDGIDYHITDTFGEGLYESCKEVKFGTMNT 174

Query: 181 RAIEFVGAGAENFKEWFAFLGLQADLGLPGSPYAINFRSSTPELSVMEHMNVSTYSCGDT 360
           RAI FVG GA+NF+EWF F+G +A  G PGSPYAINF+SS PE S M  MNVS YSCGDT
Sbjct: 175 RAINFVGGGAKNFREWFTFIGQKAPSGFPGSPYAINFKSSIPESSAMVPMNVSVYSCGDT 234

Query: 361 SLG-XXXXXXXXXXXXXXXXXXXXXXXXXXFRIGFLEVKCVDMALVILYV 507
           SLG                            RIG L+V+C+++++ ++YV
Sbjct: 235 SLGCSCGDCPSSPACSSPEPLPPHDEDSCSIRIGPLKVRCIELSMALVYV 284


>ref|NP_195548.6| Patched family protein [Arabidopsis thaliana]
           gi|332661516|gb|AEE86916.1| Patched family protein
           [Arabidopsis thaliana]
          Length = 1273

 Score =  214 bits (546), Expect = 5e-54
 Identities = 107/170 (62%), Positives = 125/170 (73%), Gaps = 1/170 (0%)
 Frame = +1

Query: 1   LNLFCELSCSPRQSLFINVTSVSEVNGSLTVDGIDYFITDTFGEGLYDSCKEVKFGTMNT 180
           LNLFCELSCSP QSLFINVTSV+EV+G+LTVDGIDY ITDTFGEGLY+SCKEVKFGTMNT
Sbjct: 115 LNLFCELSCSPNQSLFINVTSVAEVSGNLTVDGIDYHITDTFGEGLYESCKEVKFGTMNT 174

Query: 181 RAIEFVGAGAENFKEWFAFLGLQADLGLPGSPYAINFRSSTPELSVMEHMNVSTYSCGDT 360
           RAI FVG GA+NF+EWF F+G +A  G PGSPYAINF+SS PE S M  MNVS YSCGDT
Sbjct: 175 RAINFVGGGAKNFREWFTFIGQKAPSGFPGSPYAINFKSSIPESSAMVPMNVSVYSCGDT 234

Query: 361 SLG-XXXXXXXXXXXXXXXXXXXXXXXXXXFRIGFLEVKCVDMALVILYV 507
           SLG                            RIG L+V+C+++++ ++YV
Sbjct: 235 SLGCSCGDCPSSPACSSPEPLPPHDEDSCSIRIGPLKVRCIELSMALVYV 284


>ref|XP_003545057.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max]
          Length = 1328

 Score =  211 bits (537), Expect = 5e-53
 Identities = 103/169 (60%), Positives = 123/169 (72%)
 Frame = +1

Query: 1   LNLFCELSCSPRQSLFINVTSVSEVNGSLTVDGIDYFITDTFGEGLYDSCKEVKFGTMNT 180
           LNLFCELSCSP QSLFINVTS+SEVNG++TVDGIDY+IT+TFGEGLY+SCK+VKFGTMNT
Sbjct: 155 LNLFCELSCSPNQSLFINVTSISEVNGNMTVDGIDYYITETFGEGLYESCKDVKFGTMNT 214

Query: 181 RAIEFVGAGAENFKEWFAFLGLQADLGLPGSPYAINFRSSTPELSVMEHMNVSTYSCGDT 360
           RAI+FVGAGA NFKEWFAFLG +   G PGSPY+I F+++  + S M+ MN S YSC DT
Sbjct: 215 RAIDFVGAGASNFKEWFAFLGQKVPPGFPGSPYSILFKTTILDSSPMKLMNASVYSCNDT 274

Query: 361 SLGXXXXXXXXXXXXXXXXXXXXXXXXXXFRIGFLEVKCVDMALVILYV 507
           SLG                           RIG L+V+CVD ++ ILY+
Sbjct: 275 SLGCSCGDCPSSPVCSGSEPSPPRKDPCSIRIGSLKVRCVDFSMAILYI 323


>ref|XP_002312804.1| cholesterol transport protein [Populus trichocarpa]
           gi|222849212|gb|EEE86759.1| cholesterol transport
           protein [Populus trichocarpa]
          Length = 1223

 Score =  208 bits (530), Expect = 3e-52
 Identities = 105/170 (61%), Positives = 122/170 (71%), Gaps = 1/170 (0%)
 Frame = +1

Query: 1   LNLFCELSCSPRQSLFINVTSVSEVNGSLTVDGIDYFITDTFGEGLYDSCKEVKFGTMNT 180
           LNLFCELSCSP QSLFINVTS+SEVNG+LTVDGI Y++TD FGE LYDSCK+VKFGTMNT
Sbjct: 76  LNLFCELSCSPNQSLFINVTSISEVNGNLTVDGIAYYVTDDFGERLYDSCKDVKFGTMNT 135

Query: 181 RAIEFVGAGAENFKEWFAFLGLQADLGLPGSPYAINFRSSTPELSVMEHMNVSTYSCGDT 360
           RAI+FVG GA NFKEWFAF+G +A  G PGSPY I+F+S+ P+ S M  MNVS YSCGDT
Sbjct: 136 RAIDFVGGGANNFKEWFAFIGQKAPPGFPGSPYEIDFKSTIPDSSKMVPMNVSAYSCGDT 195

Query: 361 SLG-XXXXXXXXXXXXXXXXXXXXXXXXXXFRIGFLEVKCVDMALVILYV 507
           SLG                            RIG L+VKC+D ++ ILY+
Sbjct: 196 SLGCSCGDCPLAPACSSSEPPSPPKKESCLIRIGPLKVKCLDFSVAILYI 245


>ref|XP_002279611.2| PREDICTED: niemann-Pick C1 protein [Vitis vinifera]
          Length = 1234

 Score =  207 bits (527), Expect = 7e-52
 Identities = 104/170 (61%), Positives = 125/170 (73%), Gaps = 1/170 (0%)
 Frame = +1

Query: 1   LNLFCELSCSPRQSLFINVTSVSEVNGSLTVDGIDYFITDTFGEGLYDSCKEVKFGTMNT 180
           LNLFCELSCSP QSLFINVTS+++ N S TVDGID++++D FGEGLY+SCK+VKFGTMNT
Sbjct: 76  LNLFCELSCSPNQSLFINVTSIAKGNCSSTVDGIDFYVSDAFGEGLYNSCKDVKFGTMNT 135

Query: 181 RAIEFVGAGAENFKEWFAFLGLQADLGLPGSPYAINFRSSTPELSVMEHMNVSTYSCGDT 360
           RAI+F+GAGA NFKEWFAF+G QADLG+PGSPYAINF+ S PE S ME MNVS YSCGDT
Sbjct: 136 RAIQFIGAGARNFKEWFAFIGQQADLGMPGSPYAINFK-SRPESSGMELMNVSIYSCGDT 194

Query: 361 SLG-XXXXXXXXXXXXXXXXXXXXXXXXXXFRIGFLEVKCVDMALVILYV 507
           SLG                             +G ++VKC++ +L ILY+
Sbjct: 195 SLGCSCGDCPSSPVCSDYEPPSPQQKDACSISLGSVKVKCIEFSLAILYI 244


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