BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00022258
         (2546 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    78   3e-32
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                73   2e-31
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    69   3e-31
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   140   1e-30
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    65   6e-28

>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 78.2 bits (191), Expect(3) = 3e-32
 Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 22/233 (9%)
 Frame = +2

Query: 455  IVATLTSHYNPLSPSLWAKWVHVTVLKTKSFWAIP-IPPDCSWIWRKVLQHRDLARRHIS 631
            +V  + SH N    SLW KWV   +L+  SFW +       SWIW+K+L++R++A+    
Sbjct: 890  LVWKIVSHSN----SLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSK 945

Query: 632  YDIGNGATN*PMV*PMD*SFSFD------KLCSFVSDCQL------------WAWSSCQC 757
             ++GNG            SF +D      +L     D  L             AW++ + 
Sbjct: 946  VEVGNGKQT---------SFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQ 996

Query: 758  EQHYS*F*VGVTCFESPVSLLFRNSFDYSRPCDSAKSDGLLWDG---TVATNVKASTIWN 928
             +H            + V  +  ++   S    +   D +LW G      T       W+
Sbjct: 997  RRH-----------RNDVYNVIEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWH 1045

Query: 929  SFRLTGPTMPWHSLVWHKTVPPRQSFILWLAFHKGLRTLDRLTQFGLDINPMC 1087
              R T   +PWH ++W     P+ SF  WLA H  L T DR+  +   I   C
Sbjct: 1046 HTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDC 1098



 Score = 55.1 bits (131), Expect(3) = 3e-32
 Identities = 29/83 (34%), Positives = 42/83 (50%)
 Frame = +3

Query: 1071 ISTLCVLCLNDRETFNHLFFDCSFSFQILVDVLRQCGWRGFSRSWTSITGFISSRSCINF 1250
            I+T C+ C    ET +HLFF CSF+  I VD+ R      ++  W SI   I++      
Sbjct: 1094 IATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIFKTQYTSHWQSIIEAITNSQHHRV 1153

Query: 1251 HSSLLHFGFASVVYRIWTERNAR 1319
               L  + F + +Y +W ERN R
Sbjct: 1154 EWFLRRYVFQATIYIVWRERNGR 1176



 Score = 54.7 bits (130), Expect(3) = 3e-32
 Identities = 22/61 (36%), Positives = 37/61 (60%)
 Frame = +3

Query: 264  YWSAHFILPAAVLKDLQSSMSRFLWKGPSMDKFGSKVAWTKICLPFAEGGLAIKNLADWN 443
            +W A F LP   +++L+   S FLW G  M+   +K++W  +C P  EGGL +++L + N
Sbjct: 824  FWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEAN 883

Query: 444  N 446
            +
Sbjct: 884  D 884


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 73.2 bits (178), Expect(3) = 2e-31
 Identities = 58/215 (26%), Positives = 86/215 (40%), Gaps = 24/215 (11%)
 Frame = +2

Query: 491  SPSLWAKWVHVTVLKTKSFWAIPIPPDC-SWIWRKVLQHRDLARRHISYDIGNGATN*PM 667
            S SLW KWV   +++ KS W++       SWIWRK+L+ RD+A+     ++GNG +    
Sbjct: 545  SNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESA--- 601

Query: 668  V*PMD*SFSFD------KLCSFVSD------------CQLWAWSSCQCEQHYS*F*VGVT 793
                  SF +D      +L   V D                AW+     +H +       
Sbjct: 602  ------SFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVADAWTRRSRRRHRT------- 648

Query: 794  CFESPVSLL--FRNSFDYSRPCDSAKSDGLLWDG---TVATNVKASTIWNSFRLTGPTMP 958
                  SLL        Y R   S   D +LW G       +      W+  + T  T+ 
Sbjct: 649  ------SLLNEIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVS 702

Query: 959  WHSLVWHKTVPPRQSFILWLAFHKGLRTLDRLTQF 1063
            WH  VW +   P+ +   WLA H  L T DR+ ++
Sbjct: 703  WHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKW 737



 Score = 57.0 bits (136), Expect(3) = 2e-31
 Identities = 23/61 (37%), Positives = 36/61 (59%)
 Frame = +3

Query: 264 YWSAHFILPAAVLKDLQSSMSRFLWKGPSMDKFGSKVAWTKICLPFAEGGLAIKNLADWN 443
           +W A F LP   ++++    S FLW G  M    +K++W  +C P AEGGL ++NL + N
Sbjct: 471 FWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEAN 530

Query: 444 N 446
           +
Sbjct: 531 D 531



 Score = 55.1 bits (131), Expect(3) = 2e-31
 Identities = 25/83 (30%), Positives = 41/83 (49%)
 Frame = +3

Query: 1071 ISTLCVLCLNDRETFNHLFFDCSFSFQILVDVLRQCGWRGFSRSWTSITGFISSRSCINF 1250
            +S  CVLC N+ +T  HLFF CS++  +   + +      +S  W+ +   IS+      
Sbjct: 743  VSGNCVLCTNNSKTLEHLFFSCSYASTVWAALAKGIWKTRYSTRWSHLLTHISTHFQDRV 802

Query: 1251 HSSLLHFGFASVVYRIWTERNAR 1319
               L  + F + +Y +W ERN R
Sbjct: 803  EGFLTRYIFQATIYHVWRERNGR 825


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score = 68.9 bits (167), Expect(3) = 3e-31
 Identities = 54/208 (25%), Positives = 79/208 (37%), Gaps = 22/208 (10%)
 Frame = +2

Query: 497  SLWAKWVHVTVLKTKSFWAIPIPPDC-SWIWRKVLQHRDLARRHISYDIGNGATN*PMV* 673
            SLW KW  + +LK +SFW+I       SWIWR++L+HR++A+     ++ NG        
Sbjct: 621  SLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNT----- 675

Query: 674  PMD*SFSFDKLCSFVSDCQLW------------------AWSSCQCEQHYS*F*VGVTCF 799
                SF FD          L                   AWS  + ++H       +  F
Sbjct: 676  ----SFWFDNWSEKGPLINLTGARGAIDMGISRHMTLAEAWSRRRRKRHRVEI---LNEF 728

Query: 800  ESPVSLLFRNSFDYSRPCDSAKSDGLLWDG---TVATNVKASTIWNSFRLTGPTMPWHSL 970
            E  +   +++        +    D +LW G              WN  R +     WH  
Sbjct: 729  EEILLQKYQHR-------NIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKG 781

Query: 971  VWHKTVPPRQSFILWLAFHKGLRTLDRL 1054
            VW     P+ SF  WLA    L T DR+
Sbjct: 782  VWFAHATPKFSFCAWLAIRNRLSTGDRM 809



 Score = 65.1 bits (157), Expect(3) = 3e-31
 Identities = 38/125 (30%), Positives = 59/125 (47%)
 Frame = +3

Query: 1077 TLCVLCLNDRETFNHLFFDCSFSFQILVDVLRQCGWRGFSRSWTSITGFISSRSCINFHS 1256
            T CV C +  ET +HLFF C +S +I   + +      FS  W+++  +IS        S
Sbjct: 818  TTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVYKDRFSTKWSAVVNYISDSQPDRIQS 877

Query: 1257 SLLHFGFASVVYRIWTERNARIFSHTSIPAQILIRDIIHLIKCGLHSNTKFQKIKSRLCY 1436
             L  + F   ++ IW ERN+R     S  A  LIR I   I+  L +  K   ++     
Sbjct: 878  FLSRYTFQVSIHSIWRERNSRRHGEKSRSASNLIRQIDKTIRNQLSTIKKKGDLRLEKGL 937

Query: 1437 RSLVL 1451
            ++L+L
Sbjct: 938  QTLIL 942



 Score = 50.4 bits (119), Expect(3) = 3e-31
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = +3

Query: 264 YWSAHFILPAAVLKDLQSSMSRFLWKGPSMDKFGSKVAWTKICLPFAEGGLAIKNLADWN 443
           +W   F LP   + ++    S  LW GP ++   +KV+W +IC P  EGGL +++L + N
Sbjct: 545 FWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREAN 604


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
            predicted protein [Populus trichocarpa]
          Length = 517

 Score =  140 bits (354), Expect = 1e-30
 Identities = 115/396 (29%), Positives = 170/396 (42%), Gaps = 19/396 (4%)
 Frame = +3

Query: 252  SSQAYWSAHFILPAAVLKDLQSSMSRFLWKGPSMDKFGSKVAWTKICLPFAEGGLAIKNL 431
            S Q YW++ F+LP  V+K+++  M  FLW G  M   G+KVAW ++CLP  EGGL IK++
Sbjct: 107  SIQVYWASLFLLPGQVIKNVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSI 166

Query: 432  ADWNNSXXXXXXXXXXXTPFLPLFGLNGSMSLCSRRNLSGLFRSLLTVLGSGGKCYNTGI 611
             +WN                  ++      +L   RN     ++      + GK      
Sbjct: 167  KEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNF-WTIKTPQNCSWAWGKILKLRS 225

Query: 612  LLGDTYXXXXXXXXXXSLWFDPWINHSPLTNSVRSSLIVNSGLGPHASVNNIIHNSRWVL 791
            L               SLWFD W  HSPL +S     I +SG+  +A VN +I NS W  
Sbjct: 226  LAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKT 285

Query: 792  PASNH-QCHCFFEILLTTLDLVTQQKVMV---------FCGMVPWLQM*RLLLSGILFV* 941
            P +     H   E + +  +    QK  +         F   V W Q+ R          
Sbjct: 286  PTTQAIGWHPIIEAIPSNSNPKMGQKDELVWLDSPNHRFSVKVAWEQLRRHR-------- 337

Query: 942  LALPCPGIAWFGIRLCHLGNHLFSGLLFIRGFGPLTD*LNLALI--STLCVLCLNDRETF 1115
              +    I WF      +  H F   + ++      D L+   I     C LCL + E  
Sbjct: 338  QMVEWHDIVWFKNA---VPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDH 394

Query: 1116 NHLFFDCSFSFQILVDVLRQC-------GWRGFSRSWTSITGFISSRSCINFHSSLLHFG 1274
            NHLFF+CS++  I  DV  +C       GW  + R W +++     +S +NF   L    
Sbjct: 395  NHLFFECSYTKAIWWDVCDRCDIPRMTKGWDEWIR-WATVSW--HGKSFVNFSCKL---S 448

Query: 1275 FASVVYRIWTERNARIFSHTSIPAQILIRDIIHLIK 1382
            FA+ VY +W ERNARIF+  S    +++  I  +I+
Sbjct: 449  FAATVYHVWQERNARIFAGMSRTPNLVLNQIECIIR 484


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 65.5 bits (158), Expect(3) = 6e-28
 Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 22/211 (10%)
 Frame = +2

Query: 497  SLWAKWVHVTVLKTKSFWAIPIPPDC-SWIWRKVLQHRDLARRHISYDIGNGATN*PMV* 673
            SLW KWV+  +++ ++FW++       SW+WRK+L+ RD AR     ++ +G        
Sbjct: 1047 SLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFT----- 1101

Query: 674  PMD*SFSFDKLCSFVSDCQLWAWSSCQCEQHYS*---F*VGVTCFESPVSLL-------- 820
                SF  D  C              +  QH        +G+    +   ++        
Sbjct: 1102 ----SFWHDHWCPLG-----------RLHQHMGSRGTIDLGIPNNATVAEVMNTHRRKRH 1146

Query: 821  -------FRNSFDYSRPCDSAKSDGLLW---DGTVATNVKASTIWNSFRLTGPTMPWHSL 970
                    ++  + +R   S   D  LW   + T  ++  +S  W   R       W+  
Sbjct: 1147 RADFLNQIKSQIELARQDRSTDGDRSLWKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRG 1206

Query: 971  VWHKTVPPRQSFILWLAFHKGLRTLDRLTQF 1063
            VW     P+ SF+ WLAFH  L T D++ ++
Sbjct: 1207 VWFSASTPKYSFVTWLAFHNRLTTSDKICKW 1237



 Score = 55.8 bits (133), Expect(3) = 6e-28
 Identities = 23/60 (38%), Positives = 38/60 (63%)
 Frame = +3

Query: 264  YWSAHFILPAAVLKDLQSSMSRFLWKGPSMDKFGSKVAWTKICLPFAEGGLAIKNLADWN 443
            +W + F LP A L++++   S FLW GP ++   +K+AW+++C    EGGL +K L + N
Sbjct: 971  FWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEAN 1030



 Score = 52.0 bits (123), Expect(3) = 6e-28
 Identities = 28/93 (30%), Positives = 43/93 (46%)
 Frame = +3

Query: 1083 CVLCLNDRETFNHLFFDCSFSFQILVDVLRQCGWRGFSRSWTSITGFISSRSCINFHSSL 1262
            CV C  + ET +HLFF C +S  +   + +         +W  IT  +   S    H   
Sbjct: 1245 CVFCGEELETRDHLFFSCPYSSHVWFSLTKGLLNGRNILNWNLITPHLLDSSRPYLHVFT 1304

Query: 1263 LHFGFASVVYRIWTERNARIFSHTSIPAQILIR 1361
            L + F + ++ +W ERN R    T+IPA  L +
Sbjct: 1305 LRYAFQASIHSLWRERNCRRHGETAIPAAKLAK 1337