BLASTX nr result
ID: Panax21_contig00022144
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00022144
(1038 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002319146.1| predicted protein [Populus trichocarpa] gi|2... 277 4e-80
ref|XP_002525463.1| pentatricopeptide repeat-containing protein,... 271 6e-80
ref|XP_002265471.1| PREDICTED: pentatricopeptide repeat-containi... 255 2e-75
emb|CAN78346.1| hypothetical protein VITISV_033453 [Vitis vinifera] 259 3e-74
ref|XP_003631749.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 239 8e-71
>ref|XP_002319146.1| predicted protein [Populus trichocarpa] gi|222857522|gb|EEE95069.1|
predicted protein [Populus trichocarpa]
Length = 337
Score = 277 bits (709), Expect(2) = 4e-80
Identities = 134/191 (70%), Positives = 155/191 (81%)
Frame = -2
Query: 1034 EKSGFNVSDIRVTNSLIDAYAKCGSVESALKFFECISEERKNLVSWTSIISGCAMYGMTK 855
EK GFN DIRV NS+ID Y+KCG + SA KFFE IS ERKNLVSWTSIISG AM+GM K
Sbjct: 117 EKRGFNAFDIRVANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWK 176
Query: 854 EAVDNFEEMKNVGFKPNGIAFLSILNACSHGGLVDEGLNFFRNMVNEFGIVPDIKHYGCL 675
EAV+ FE M+ G KPN + FLS+LNACSHGGLVDEGL F MVNE G++PDIKHYGC+
Sbjct: 177 EAVEYFERMEKAGLKPNRVTFLSVLNACSHGGLVDEGLRCFYKMVNEHGVLPDIKHYGCV 236
Query: 674 VDMLGRAGRLEEAESMAMDIPTEMVSDVIWRTLLGACSFHGNAEMGERVLGKILKMERES 495
VDMLGR GRLEEAE+MA++IP+E+V+ VIWRTLLGACSFHGN EMGERV KI++MER
Sbjct: 237 VDMLGRTGRLEEAENMALEIPSEIVNVVIWRTLLGACSFHGNVEMGERVTRKIMEMERGY 296
Query: 494 AGDCAFVQHIF 462
GD + +IF
Sbjct: 297 GGDYVLMYNIF 307
Score = 48.1 bits (113), Expect(2) = 4e-80
Identities = 21/37 (56%), Positives = 31/37 (83%)
Frame = -3
Query: 484 VLLSNIFFGVVRYADSERVRRVMDERNASKVPGHSLI 374
VL+ NIF G RY D+ER+R++M++RNA K+PG+SL+
Sbjct: 301 VLMYNIFAGAGRYEDAERLRKLMNKRNAFKLPGNSLV 337
>ref|XP_002525463.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223535276|gb|EEF36953.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 337
Score = 271 bits (694), Expect(2) = 6e-80
Identities = 132/191 (69%), Positives = 154/191 (80%)
Frame = -2
Query: 1034 EKSGFNVSDIRVTNSLIDAYAKCGSVESALKFFECISEERKNLVSWTSIISGCAMYGMTK 855
EK GFN SDIRVTNS+ID YAKCG + SA +FFE IS ERKNLVSWTSIISG AM+GM +
Sbjct: 117 EKRGFNSSDIRVTNSIIDTYAKCGCIVSASRFFEEISVERKNLVSWTSIISGFAMHGMGQ 176
Query: 854 EAVDNFEEMKNVGFKPNGIAFLSILNACSHGGLVDEGLNFFRNMVNEFGIVPDIKHYGCL 675
EAV FE M+ G KPN + FLS+LNACSHGGLV EG FF MVN++ I+PDIKHYGCL
Sbjct: 177 EAVKRFENMERTGLKPNRVTFLSVLNACSHGGLVAEGHEFFEKMVNQYSILPDIKHYGCL 236
Query: 674 VDMLGRAGRLEEAESMAMDIPTEMVSDVIWRTLLGACSFHGNAEMGERVLGKILKMERES 495
VDMLGR GRLEEAE +A+ IP+E+V+ VIWRTLLGACSFHGN+E+GERV KI++MER
Sbjct: 237 VDMLGRTGRLEEAEKLALGIPSEIVNAVIWRTLLGACSFHGNSEIGERVTRKIMEMERGY 296
Query: 494 AGDCAFVQHIF 462
GD + +IF
Sbjct: 297 GGDYVLMYNIF 307
Score = 53.5 bits (127), Expect(2) = 6e-80
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = -3
Query: 484 VLLSNIFFGVVRYADSERVRRVMDERNASKVPGHSLI 374
VL+ NIF GV R+ D+ER+R +MDERNA KVPGHSL+
Sbjct: 301 VLMYNIFAGVGRFEDAERLRVLMDERNAFKVPGHSLV 337
Score = 60.1 bits (144), Expect = 9e-07
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
Frame = -2
Query: 995 NSLIDAYAKCGSVESALKFFECISEERKNLVSWTSIISGCAMYGMTKEAVDNFEEMKNV- 819
N +I K G +E A FF+ + E KN+VSWT II G E + F M +
Sbjct: 27 NVMITGLVKWGKLEFARSFFDDMPE--KNVVSWTGIIDGYVRMNRITEGLALFRRMVSFE 84
Query: 818 GFKPNGIAFLSILNACSHGGLVDEGLNFFRNMVNEFGI-VPDIKHYGCLVDMLGRAGRLE 642
G P+ I L+IL A S G + + +V + G DI+ ++D + G +
Sbjct: 85 GIAPSEITILAILPAISGIGEL-QNCGLIHCLVEKRGFNSSDIRVTNSIIDTYAKCGCIV 143
Query: 641 EAESMAMDIPTEMVSDVIWRTLLGACSFHGNAEMGERVLGKILKMER 501
A +I E + V W +++ + HG MG+ + + MER
Sbjct: 144 SASRFFEEISVERKNLVSWTSIISGFAMHG---MGQEAVKRFENMER 187
>ref|XP_002265471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Vitis vinifera]
Length = 470
Score = 255 bits (652), Expect(2) = 2e-75
Identities = 125/192 (65%), Positives = 148/192 (77%)
Frame = -2
Query: 1037 GEKSGFNVSDIRVTNSLIDAYAKCGSVESALKFFECISEERKNLVSWTSIISGCAMYGMT 858
GEKSG N SDIR+ SL+D YAKCG +ESA F I+ + +NLVSWTSIIS AM+GM
Sbjct: 249 GEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMA 308
Query: 857 KEAVDNFEEMKNVGFKPNGIAFLSILNACSHGGLVDEGLNFFRNMVNEFGIVPDIKHYGC 678
KEA++NFE M+ KPN I FLS+LNACSHGGLV+EGL F MVNE I PD+KHYGC
Sbjct: 309 KEALENFERMQKECLKPNRITFLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGC 368
Query: 677 LVDMLGRAGRLEEAESMAMDIPTEMVSDVIWRTLLGACSFHGNAEMGERVLGKILKMERE 498
L+DMLGRAGRL+EAE MA++IP +V+ VIWRTLLGACSFHGN EMG RV KIL+MER+
Sbjct: 369 LIDMLGRAGRLDEAEKMALEIPDYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERK 428
Query: 497 SAGDCAFVQHIF 462
GD + +IF
Sbjct: 429 YGGDYVLLSNIF 440
Score = 54.3 bits (129), Expect(2) = 2e-75
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = -3
Query: 484 VLLSNIFFGVVRYADSERVRRVMDERNASKVPGHS 380
VLLSNIF GV R+ D ERVRR+MDERNASKVPG S
Sbjct: 434 VLLSNIFAGVGRFWDVERVRRLMDERNASKVPGLS 468
>emb|CAN78346.1| hypothetical protein VITISV_033453 [Vitis vinifera]
Length = 538
Score = 259 bits (661), Expect(2) = 3e-74
Identities = 124/192 (64%), Positives = 150/192 (78%)
Frame = -2
Query: 1037 GEKSGFNVSDIRVTNSLIDAYAKCGSVESALKFFECISEERKNLVSWTSIISGCAMYGMT 858
GEKSG N SDIR+ SL+D YAKCG +ESA + F I + +NLVSWTSIIS AM+GM
Sbjct: 249 GEKSGLNASDIRIRTSLLDTYAKCGCIESASRVFGEIDAKSRNLVSWTSIISAFAMHGMA 308
Query: 857 KEAVDNFEEMKNVGFKPNGIAFLSILNACSHGGLVDEGLNFFRNMVNEFGIVPDIKHYGC 678
KEA++NFE M+ KPN I FLS+LNACSHGGLV+EGL FF MVN++ I PD+KHYGC
Sbjct: 309 KEALENFERMQKECLKPNRITFLSVLNACSHGGLVEEGLKFFTKMVNKYQISPDVKHYGC 368
Query: 677 LVDMLGRAGRLEEAESMAMDIPTEMVSDVIWRTLLGACSFHGNAEMGERVLGKILKMERE 498
L+DMLGRAGRL+EAE MA++IP +V+ VIWRTLLGACSFHGN EMG RV KIL+ME++
Sbjct: 369 LIDMLGRAGRLDEAEKMALEIPNYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMEKK 428
Query: 497 SAGDCAFVQHIF 462
GD + +IF
Sbjct: 429 YGGDYVLLSNIF 440
Score = 47.4 bits (111), Expect(2) = 3e-74
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -3
Query: 484 VLLSNIFFGVVRYADSERVRRVMDERNASK 395
VLLSNIF GV R+ D ERVRR+MDERNASK
Sbjct: 434 VLLSNIFAGVGRFWDVERVRRLMDERNASK 463
>ref|XP_003631749.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09220, mitochondrial-like [Vitis vinifera]
Length = 509
Score = 239 bits (609), Expect(2) = 8e-71
Identities = 119/193 (61%), Positives = 147/193 (76%), Gaps = 1/193 (0%)
Frame = -2
Query: 1037 GEKSGFNVSDIRVTNSLIDAYAKCGSVESALKFFECISEERKNLVSWTSIISGCAMYGMT 858
GEKSG N SDIR+ NSL+D YAKCG +ES + F I+ + +NLVSWTS+IS AM+GM
Sbjct: 291 GEKSGLNASDIRIRNSLLDTYAKCGCMESIXRVFGEIAAKSRNLVSWTSVISAFAMHGMA 350
Query: 857 KEAVDNFEEMKNVGFKPNGIAFLSILNACSHGGLVDEG-LNFFRNMVNEFGIVPDIKHYG 681
KEA++ +E KPN I FLS+LNACSHGGLV+EG L FF MVNE+ + PD+KHYG
Sbjct: 351 KEALEILKEC----LKPNRITFLSVLNACSHGGLVEEGRLKFFAKMVNEYQMSPDVKHYG 406
Query: 680 CLVDMLGRAGRLEEAESMAMDIPTEMVSDVIWRTLLGACSFHGNAEMGERVLGKILKMER 501
L+DMLGRAGRL+EAE MA++ P ++V+ VIWRTLLGACSFHGN EMG RV KIL+MER
Sbjct: 407 GLIDMLGRAGRLDEAEKMALEFPDDVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMER 466
Query: 500 ESAGDCAFVQHIF 462
+ GD + +IF
Sbjct: 467 KYGGDYVLLSNIF 479
Score = 55.8 bits (133), Expect(2) = 8e-71
Identities = 28/37 (75%), Positives = 32/37 (86%)
Frame = -3
Query: 484 VLLSNIFFGVVRYADSERVRRVMDERNASKVPGHSLI 374
VLLSNIF GV R+ D ERVRR+MDERNASK+PG SL+
Sbjct: 473 VLLSNIFAGVGRFWDVERVRRLMDERNASKLPGLSLV 509