BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00021973
         (1264 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28010.3| unnamed protein product [Vitis vinifera]              359   9e-97
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   352   2e-94
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   330   5e-88
ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polyme...   323   4e-86
ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arab...   322   2e-85

>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  359 bits (921), Expect = 9e-97
 Identities = 194/368 (52%), Positives = 250/368 (67%), Gaps = 2/368 (0%)
 Frame = -3

Query: 1109 FRKTFLVLSYIGRKKLEDVISIDDALNILRTKDYPMEIFEAQIWSNYGRYCLVGKESTDR 930
            FRK FL+LSYIG K+ ED++S ++   IL+ K+ PM +FE ++W+N GR  +   +  DR
Sbjct: 110  FRKAFLILSYIGDKRPEDLLSAEE---ILKLKNLPMGVFETEVWNNLGRKFI---KEEDR 163

Query: 929  RKYLDWDSGKTHHYYCQVYQDGSYSFTGPYLNTTKTLLHRTLGDENILMVKFEEQPMDFA 750
            ++  DWDS KTH Y+C V  DGSY F GPYLN T+T L R LGDENIL+VKF E   D +
Sbjct: 164  QRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRS 223

Query: 749  M--CSRNYNAAYIKIAEEGILIGQRRYRFFVFKDGDRKGKRKSSFSSAVNCYFVRMEFIT 576
               CS + NA+Y KIA EGI +G R+YRFFVFKDG ++ K+K+  SS V CYFV ME   
Sbjct: 224  SLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSS-VKCYFVFMESSA 282

Query: 575  PCDEREPYILTNKTMHEARCLFMHLHTTPSMAKYVSRCSLILSKTIKLQVDLASVHIERI 396
                     L+ KT+HEARC+FMH H   S+AKY++R SLILSKT+KL VDL++V+I+RI
Sbjct: 283  ---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRI 333

Query: 395  EDIPCRDESGRNVCNEDGDLLIHTDGTGFISEDLAMKCPRGCYNAKYLKDENIELEYKSS 216
            +D P RDE G  V +ED   LI TDGTGFISEDLA++CP      KY+ + N +      
Sbjct: 334  DDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSD------ 387

Query: 215  EGRVIDAHVREPPLLMQCRLFHNGFAVKGTLLINRKLPCGTIQIRRSMVKVEADSRLGNA 36
                        PLL+QCRLF+NG AVKGTLL+NRKLP  TIQIR SM+KVE D +L + 
Sbjct: 388  ------------PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDT 435

Query: 35   PSLNSLEV 12
             ++NS+E+
Sbjct: 436  QTVNSVEI 443


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  352 bits (902), Expect = 2e-94
 Identities = 195/376 (51%), Positives = 252/376 (67%), Gaps = 10/376 (2%)
 Frame = -3

Query: 1109 FRKTFLVLSYIGRKKLEDVISIDDALNILRTKDYPMEIFEAQIWSNYGRYCLVGKESTDR 930
            FRK FL+LSYIG  + ED++S ++   IL+ K+ PM +FE ++W+N GR  +   +  DR
Sbjct: 110  FRKAFLILSYIGELRPEDLLSAEE---ILKLKNLPMGVFETEVWNNLGRKFI---KEEDR 163

Query: 929  RKYLDWDSGKTHHYYCQVYQDGSYSF--------TGPYLNTTKTLLHRTLGDENILMVKF 774
            ++  DWDS KTH Y+C V  DGSY F         GPYLN T+T L R LGDENIL+VKF
Sbjct: 164  QRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQRVLGDENILLVKF 223

Query: 773  EEQPMDFAM--CSRNYNAAYIKIAEEGILIGQRRYRFFVFKDGDRKGKRKSSFSSAVNCY 600
             E   D +   CS + NA+Y KIA EGI +G R+YRFFVFKDG ++ K+K+  SS V CY
Sbjct: 224  AEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSS-VKCY 282

Query: 599  FVRMEFITPCDEREPYILTNKTMHEARCLFMHLHTTPSMAKYVSRCSLILSKTIKLQVDL 420
            FV ME            L+ KT+HEARC+FMH H   S+AKY++R SLILSKT+KL VDL
Sbjct: 283  FVFMESSA---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDL 333

Query: 419  ASVHIERIEDIPCRDESGRNVCNEDGDLLIHTDGTGFISEDLAMKCPRGCYNAKYLKDEN 240
            ++V+I+RI+D P RDE G  V +ED   LI TDGTGFISEDLA++CP      KY+ + N
Sbjct: 334  STVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGN 393

Query: 239  IELEYKSSEGRVIDAHVREPPLLMQCRLFHNGFAVKGTLLINRKLPCGTIQIRRSMVKVE 60
             +         V D+     PLL+QCRLF+NG AVKGTLL+NRKLP  TIQIR SM+KVE
Sbjct: 394  SD---------VCDSRY---PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVE 441

Query: 59   ADSRLGNAPSLNSLEV 12
             D +L +  ++NS+E+
Sbjct: 442  TDPKLSDTQTVNSVEI 457


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  330 bits (846), Expect = 5e-88
 Identities = 173/368 (47%), Positives = 237/368 (64%), Gaps = 1/368 (0%)
 Frame = -3

Query: 1109 FRKTFLVLSYIGRKKLEDVISIDDALNILRTKDYPMEIFEAQIWSNYGR-YCLVGKESTD 933
            F+K FL+LSYI  ++L  V + D+   I   KD PM  +EA +W   GR YC      TD
Sbjct: 149  FKKAFLLLSYIPGQQLGQVTTADE---IRLWKDLPMVAYEAAVWDRLGRRYC----PQTD 201

Query: 932  RRKYLDWDSGKTHHYYCQVYQDGSYSFTGPYLNTTKTLLHRTLGDENILMVKFEEQPMDF 753
            RR  L WDSGKTH+Y C V  DGSY+F GP L  T T LH+ LGDEN+L VKF + P + 
Sbjct: 202  RRM-LQWDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDENVLTVKFADVPKNS 260

Query: 752  AMCSRNYNAAYIKIAEEGILIGQRRYRFFVFKDGDRKGKRKSSFSSAVNCYFVRMEFITP 573
            +  S +    Y +IA+ GI+IG RRY+FFVFKDG ++ K+K   +  V CYF+R +    
Sbjct: 261  STYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAS 320

Query: 572  CDEREPYILTNKTMHEARCLFMHLHTTPSMAKYVSRCSLILSKTIKLQVDLASVHIERIE 393
            CD   PYI T K++HEAR  FMH+H  P++A Y++R SLILSKT  L+VD+  +  + I+
Sbjct: 321  CDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDPID 380

Query: 392  DIPCRDESGRNVCNEDGDLLIHTDGTGFISEDLAMKCPRGCYNAKYLKDENIELEYKSSE 213
            DI C D+ G++V +++    IH+DGTG+ISEDLA  CP   +  K L+ ENI+       
Sbjct: 381  DIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSENIQ------- 433

Query: 212  GRVIDAHVREPPLLMQCRLFHNGFAVKGTLLINRKLPCGTIQIRRSMVKVEADSRLGNAP 33
                +A  ++PPLL+Q R+F++G+AVKGT L+N+KL   T+Q+R SM+KV  D  L N  
Sbjct: 434  ----EACNQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFS 489

Query: 32   SLNSLEVV 9
            + N+LEVV
Sbjct: 490  TFNALEVV 497


>ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 953

 Score =  323 bits (829), Expect = 4e-86
 Identities = 185/378 (48%), Positives = 242/378 (64%), Gaps = 11/378 (2%)
 Frame = -3

Query: 1109 FRKTFLVLSYIGRKKLEDVISIDDALNILRTKDYPMEIFEAQIWSNYGRYCLVGKESTDR 930
            FRK FL+LSYIGR+ LE+ I+  DA  I   KD PM  FE  IW ++G  C+  +     
Sbjct: 97   FRKAFLILSYIGRESLENCIT--DA-KIRSLKDLPMAKFEKTIWEDFGEKCIYDQSD--- 150

Query: 929  RKYLDWDSGKTHHYYCQVYQDGSYSFTGPYLNTTKTLLHRTLGDENILMVKFEEQPM--D 756
            R+ ++W+SG+TH Y C V+ DG+  F GP L +T+T L +TLGD+N+L+VKF E     +
Sbjct: 151  RQLVNWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKFAEDGSGKN 210

Query: 755  FAMCSRNYNAAYIKIAEEGILIGQRRYRFFVFKDGDRKGKRKSSFSSAVNCYFVRMEFIT 576
            F   +   NA Y K  +EGI +G R YRFFVFKDG  + K+K   SS V CYFVRM+   
Sbjct: 211  FRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCYFVRMQSGC 270

Query: 575  PCDEREPYILTNKTMHEARCLFMHLH-TTPSMAKYVSRCSLILSKTIKLQVDLASVHIER 399
              DE   YIL+NKT+ EAR LFMH H   P++ KY++R SLILSKT+KL +DL +V +++
Sbjct: 271  SADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNIDLTTVSVQK 330

Query: 398  IEDIPCRDESGRNVCNEDGDLLIHTDGTGFISEDLAMKCPRGCYNAKYLKDENI------ 237
            I D  C+D +G N+  ++    I TDGTGFIS DLA+ CP   Y    L++  I      
Sbjct: 331  IPDEYCKDANG-NIMVDNEKPRILTDGTGFISRDLALLCPNNVYKGSNLENNCIQEINNL 389

Query: 236  -ELEYKSSE-GRVIDAHVREPPLLMQCRLFHNGFAVKGTLLINRKLPCGTIQIRRSMVKV 63
             ELE  S+  G        EPPLL+QCRLFH G A+KGTLL+NRKLP  TIQ+R SM+KV
Sbjct: 390  VELEDMSNAMGEAEQLSTHEPPLLIQCRLFHMGHAIKGTLLVNRKLPPRTIQVRPSMIKV 449

Query: 62   EADSRLGNAPSLNSLEVV 9
            E D  + +  S+NSLEVV
Sbjct: 450  EKDPSV-HMQSINSLEVV 466


>ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| RNA-dependent RNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 992

 Score =  322 bits (824), Expect = 2e-85
 Identities = 174/369 (47%), Positives = 238/369 (64%), Gaps = 2/369 (0%)
 Frame = -3

Query: 1109 FRKTFLVLSYIGRKKL-EDVISIDDALNILRTKDYPMEIFEAQIWSNYG-RYCLVGKEST 936
            F+K FL+LSYIG + L E+VIS D    I + KD PM  +EA +W+  G RYC       
Sbjct: 148  FKKAFLLLSYIGGESLVEEVISGDQ---IRKWKDLPMVSYEAAVWNRLGQRYC----SPK 200

Query: 935  DRRKYLDWDSGKTHHYYCQVYQDGSYSFTGPYLNTTKTLLHRTLGDENILMVKFEEQPMD 756
            +RR+ L+ DSG TH+Y C V  DGSY F G  L  T T LH+ LGD+N+L VKF++    
Sbjct: 201  ERRRPLEGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTVKFDKVLGV 260

Query: 755  FAMCSRNYNAAYIKIAEEGILIGQRRYRFFVFKDGDRKGKRKSSFSSAVNCYFVRMEFIT 576
               C+  Y+  Y  IA+ GI++G RRYRFFVFKDG ++ K+K   +  V CYF+R +   
Sbjct: 261  ETYCNDLYST-YKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTA 319

Query: 575  PCDEREPYILTNKTMHEARCLFMHLHTTPSMAKYVSRCSLILSKTIKLQVDLASVHIERI 396
              D + PYI   K+MHEAR  FMH++T  S+  Y+SR SLILSKT  L+VD+  +  E+I
Sbjct: 320  SIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQI 379

Query: 395  EDIPCRDESGRNVCNEDGDLLIHTDGTGFISEDLAMKCPRGCYNAKYLKDENIELEYKSS 216
            +DI C D+  ++V +++G   IH+DGTG+ISEDLA  CP   +  K ++  NI+ +  + 
Sbjct: 380  DDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNF 439

Query: 215  EGRVIDAHVREPPLLMQCRLFHNGFAVKGTLLINRKLPCGTIQIRRSMVKVEADSRLGNA 36
            EG+      +EPPLL+Q R+F+NG+AVKGT L N+KLP  T+Q+R SM+KV  D  L N 
Sbjct: 440  EGQ--GPCGQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNL 497

Query: 35   PSLNSLEVV 9
             + NSLEVV
Sbjct: 498  STFNSLEVV 506