BLASTX nr result

ID: Panax21_contig00021959 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00021959
         (440 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272277.1| PREDICTED: zinc finger CCCH domain-containin...   110   1e-22
ref|XP_003548373.1| PREDICTED: zinc finger CCCH domain-containin...    90   2e-16
emb|CAD36023.1| transcription factor R18 [Craterostigma plantagi...    89   3e-16
ref|XP_002304233.1| predicted protein [Populus trichocarpa] gi|2...    75   4e-12
ref|XP_004141817.1| PREDICTED: zinc finger CCCH domain-containin...    71   8e-11

>ref|XP_002272277.1| PREDICTED: zinc finger CCCH domain-containing protein 62 [Vitis
           vinifera] gi|297742965|emb|CBI35832.3| unnamed protein
           product [Vitis vinifera]
          Length = 438

 Score =  110 bits (275), Expect = 1e-22
 Identities = 62/132 (46%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
 Frame = -2

Query: 394 LKMAISEQKDHSEKVESDTDTYDSNDSEEDPSFDILEETQASFSKLSINNKAKSGYSISK 215
           L   + E+ D+SE   SD++  DSNDS++DP++DI EETQ+ FS LS+  K+KS      
Sbjct: 7   LPNVVMEEDDYSETEGSDSE--DSNDSQDDPTYDIFEETQSGFSNLSMEKKSKSRIQKEM 64

Query: 214 XXXXXXXXXXXXXXXE-LDKKDQKCYXXXXXXXXXXXIDKLKVDQCKLYLRKNGLRLTGN 38
                            LD+KD+K +           ++KLKVDQCK+YLRKNGLRLTGN
Sbjct: 65  DMGFVEDLDDVEIVAPVLDEKDEKSFEMVQKMIEAGQLEKLKVDQCKVYLRKNGLRLTGN 124

Query: 37  KDTLIGRIKEHL 2
           K+TLI RIKEHL
Sbjct: 125 KETLIQRIKEHL 136


>ref|XP_003548373.1| PREDICTED: zinc finger CCCH domain-containing protein 62-like
           [Glycine max]
          Length = 463

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 54/115 (46%), Positives = 68/115 (59%)
 Frame = -2

Query: 346 SDTDTYDSNDSEEDPSFDILEETQASFSKLSINNKAKSGYSISKXXXXXXXXXXXXXXXE 167
           SD D+ + +DS+EDP FD+LEET + FS LS+ +KAK+     K                
Sbjct: 20  SDPDS-EWDDSKEDPDFDLLEETHSKFSILSLKHKAKARVVEDKGLGEEVNA-------- 70

Query: 166 LDKKDQKCYXXXXXXXXXXXIDKLKVDQCKLYLRKNGLRLTGNKDTLIGRIKEHL 2
               D + +           ++KLKVD+CKLYLRKNGLRLTGNKDTLI RIKEHL
Sbjct: 71  -SAHDGENFQKVQKLIQVGPLEKLKVDECKLYLRKNGLRLTGNKDTLIQRIKEHL 124


>emb|CAD36023.1| transcription factor R18 [Craterostigma plantagineum]
          Length = 434

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 54/126 (42%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
 Frame = -2

Query: 379 SEQKDHSEKVESDTDTYDSNDSEEDPSFDILEETQASFSKLSINNKAKSGYSIS-KXXXX 203
           S ++DH +  +SD D Y    S E+  +++L E  ++F  L I  KAKS    S K    
Sbjct: 3   SSEEDHHDGFDSDED-YTDGSSMENSDYEVLGEVSSTFLNLQIKGKAKSRIVKSTKDNLE 61

Query: 202 XXXXXXXXXXXELDKKDQKCYXXXXXXXXXXXIDKLKVDQCKLYLRKNGLRLTGNKDTLI 23
                      EL K+DQKCY           ++ LKVDQCK+YLRK+ LRLTGNK TLI
Sbjct: 62  EGVEVEKTGGPELSKEDQKCYETILTMVEGGQVESLKVDQCKIYLRKHKLRLTGNKATLI 121

Query: 22  GRIKEH 5
            RIKEH
Sbjct: 122 QRIKEH 127


>ref|XP_002304233.1| predicted protein [Populus trichocarpa] gi|222841665|gb|EEE79212.1|
           predicted protein [Populus trichocarpa]
          Length = 515

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
 Frame = -2

Query: 376 EQKDHSEKVESDTDTYDSNDSEEDPSFDILEETQASFSKLSINNKAKSGYSISKXXXXXX 197
           EQ++     ES     D  DS+ DPS+ I+EET+++ S+LSI  K+KS   ++K      
Sbjct: 12  EQEEEVYSTESGGSDPDY-DSDTDPSYSIIEETRSNLSRLSIKKKSKS--RVAKDLDLSF 68

Query: 196 XXXXXXXXXELDKKDQKCYXXXXXXXXXXXI----------------DKLKVDQCKLYLR 65
                    +L + D+K Y                            + LKV+QCK+YLR
Sbjct: 69  DKDPGEKETKLAEVDEKSYEEVQKIIQDSLRLGFDFLLCDVMEAGKLEGLKVEQCKVYLR 128

Query: 64  KNGLRLTGNKDTLIGRIKEH 5
           KN LRLTG KDTLI RIKEH
Sbjct: 129 KNKLRLTGKKDTLIQRIKEH 148


>ref|XP_004141817.1| PREDICTED: zinc finger CCCH domain-containing protein 62-like
           [Cucumis sativus] gi|449480674|ref|XP_004155964.1|
           PREDICTED: zinc finger CCCH domain-containing protein
           62-like [Cucumis sativus]
          Length = 498

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
 Frame = -2

Query: 337 DTYDSNDSEEDPSFDILEETQASFSKLSINNKAKSGYSI-SKXXXXXXXXXXXXXXXELD 161
           D YDS+D E DPS+ I + T +  S+ SI  K K    + +                 ++
Sbjct: 28  DDYDSDDLECDPSYSIQKRTNSKTSRTSIRKKLKPLDIVDTNLIEDSDIDDVVPNIPIIN 87

Query: 160 KKDQK-CYXXXXXXXXXXXIDKLKVDQCKLYLRKNGLRLTGNKDTLIGRIKEHL 2
           +KD+K              ++KLKV+QCK YLR NGLRL+G KD LI RIKEHL
Sbjct: 88  EKDEKDTREVLSIIKAGGKLEKLKVEQCKSYLRNNGLRLSGTKDVLIQRIKEHL 141


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