BLASTX nr result

ID: Panax21_contig00021796 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00021796
         (502 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004143196.1| PREDICTED: zinc finger CCCH domain-containin...   101   7e-20
ref|XP_003616871.1| Zinc finger CCCH domain-containing protein [...    94   1e-17
ref|XP_002275775.1| PREDICTED: zinc finger CCCH domain-containin...    89   4e-16
ref|XP_002528968.1| zinc finger protein, putative [Ricinus commu...    87   1e-15
emb|CAN76191.1| hypothetical protein VITISV_020358 [Vitis vinifera]    84   9e-15

>ref|XP_004143196.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like
           [Cucumis sativus] gi|449515163|ref|XP_004164619.1|
           PREDICTED: zinc finger CCCH domain-containing protein
           3-like [Cucumis sativus]
          Length = 430

 Score =  101 bits (251), Expect = 7e-20
 Identities = 42/61 (68%), Positives = 49/61 (80%)
 Frame = -3

Query: 185 RVQTSEKQDGGGTADSIPYPDRPGEPDCIYYMRTGTCSYGHNCRFNHPSNIGQIGQYGGE 6
           R++ S+ QDGG  A+S PYPDRPGEPDC+YYMRTG+CSYG NCRFNHP  +GQ   Y GE
Sbjct: 25  RLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVGQGALYNGE 84

Query: 5   L 3
           L
Sbjct: 85  L 85


>ref|XP_003616871.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355518206|gb|AES99829.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 422

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 38/70 (54%), Positives = 51/70 (72%)
 Frame = -3

Query: 212 DLTRGIRRLRVQTSEKQDGGGTADSIPYPDRPGEPDCIYYMRTGTCSYGHNCRFNHPSNI 33
           ++   IRRL++ ++  +D      S+PYPDRPGEPDC+YY+RTG C YG NCR+NHP+NI
Sbjct: 19  NIEEAIRRLKINSTRDRDA--VPQSMPYPDRPGEPDCVYYLRTGMCGYGSNCRYNHPANI 76

Query: 32  GQIGQYGGEL 3
             + QYG EL
Sbjct: 77  SPVTQYGEEL 86



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = -3

Query: 155 GGTADSIPYPDRPGEPDCIYYMRTGTCSYGHNCRFNHP 42
           GG A +   PDRP +PDC Y+M TGTC YG +C+F+HP
Sbjct: 262 GGQAMNSSLPDRPEQPDCKYFMSTGTCKYGSDCKFHHP 299


>ref|XP_002275775.1| PREDICTED: zinc finger CCCH domain-containing protein 12 [Vitis
           vinifera] gi|297739220|emb|CBI28871.3| unnamed protein
           product [Vitis vinifera]
          Length = 450

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 38/62 (61%), Positives = 44/62 (70%)
 Frame = -3

Query: 188 LRVQTSEKQDGGGTADSIPYPDRPGEPDCIYYMRTGTCSYGHNCRFNHPSNIGQIGQYGG 9
           LR++  + Q+ G    S PYPDRPGEPDCIYY+RTG C YG NCRFNHP+   Q  QY G
Sbjct: 25  LRLKIHDNQEEGSVGHSSPYPDRPGEPDCIYYLRTGLCGYGSNCRFNHPAYSEQGAQYRG 84

Query: 8   EL 3
           EL
Sbjct: 85  EL 86


>ref|XP_002528968.1| zinc finger protein, putative [Ricinus communis]
           gi|223531614|gb|EEF33442.1| zinc finger protein,
           putative [Ricinus communis]
          Length = 456

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 36/61 (59%), Positives = 44/61 (72%)
 Frame = -3

Query: 185 RVQTSEKQDGGGTADSIPYPDRPGEPDCIYYMRTGTCSYGHNCRFNHPSNIGQIGQYGGE 6
           R++  + Q+ GG A S PYPDRPGEPDC+YY+RTG C YG+NCRFNHP    Q  Q+  E
Sbjct: 33  RLKIHDNQEQGGMAPSSPYPDRPGEPDCVYYLRTGLCGYGNNCRFNHPPYAAQGNQFKEE 92

Query: 5   L 3
           L
Sbjct: 93  L 93


>emb|CAN76191.1| hypothetical protein VITISV_020358 [Vitis vinifera]
          Length = 460

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 38/63 (60%), Positives = 45/63 (71%)
 Frame = -3

Query: 191 RLRVQTSEKQDGGGTADSIPYPDRPGEPDCIYYMRTGTCSYGHNCRFNHPSNIGQIGQYG 12
           R+R + + K++G     S PYPDRPGEPDCIYY+RTG C YG NCRFNHP+   Q  QY 
Sbjct: 4   RIRRRKTWKEEGS-VGHSSPYPDRPGEPDCIYYLRTGLCGYGSNCRFNHPAYSEQGAQYR 62

Query: 11  GEL 3
           GEL
Sbjct: 63  GEL 65


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