BLASTX nr result
ID: Panax21_contig00021398
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00021398
(1405 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA95319.1| retrotransposon protein, putative, unclassified [... 234 e-101
gb|AAP53789.1| retrotransposon protein, putative, unclassified [... 227 2e-98
emb|CAH66499.1| H0321H01.8 [Oryza sativa Indica Group] 243 2e-98
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group] 226 1e-96
gb|AAV24812.1| putative polyprotein [Oryza sativa Japonica Group] 228 1e-96
>gb|ABA95319.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 955
Score = 234 bits (597), Expect(3) = e-101
Identities = 105/183 (57%), Positives = 135/183 (73%)
Frame = +1
Query: 1 QQQKHETLASPGHLQPLPVPETPWADISMDFIEALPKSEGNTVIWVVVDRLTKYGHFVAL 180
Q K E + PG L PL VP+ W ISMDF+E LPKS+G VI VVVDRLTKY HF+AL
Sbjct: 584 QVTKSEHVHIPGLLNPLEVPDMAWTHISMDFVEGLPKSKGKDVILVVVDRLTKYAHFIAL 643
Query: 181 KHPFTASQLAQVFISHIYKLHGLPATIVSNRDKVFVSLFWQSLFRIVGTKLQMSTSYHPQ 360
HP+T ++ QVF+ +I+KLHG+P IV++RD+VF S F+Q +F+ +L+ ST+YHPQ
Sbjct: 644 SHPYTVEEVVQVFMDNIHKLHGMPIAIVTDRDRVFTSTFFQEVFKSQKVQLRFSTAYHPQ 703
Query: 361 SDGQTERVNQVLECYLRCKVAQNPHNWVSWLSLAELWYNTHFHTGLKATPFEMLYGYKPP 540
+DGQTERVNQ LE YLRC Q P NW SW++LAE WYNT +HT ++ TPF+ LYGY PP
Sbjct: 704 TDGQTERVNQCLESYLRCMTFQEPQNWCSWIALAEWWYNTTYHTAIQMTPFKALYGYSPP 763
Query: 541 HLN 549
++
Sbjct: 764 QIS 766
Score = 141 bits (356), Expect(3) = e-101
Identities = 68/136 (50%), Positives = 95/136 (69%)
Frame = +2
Query: 596 QDRAQLLRLMK*HLTEAQARIKHYADKHRTERVFVLRDMVYLKVRPYKQLSLSVLNQVKL 775
+++ +++ +K + +AQ R+K+YAD++RTER + DMVYLK++PY+Q + + +KL
Sbjct: 783 EEKETIVQKLKASMEDAQRRMKYYADRNRTERKLEVGDMVYLKLQPYRQNAFGIRGSLKL 842
Query: 776 LPKYYGPFLVESKVGAVAYKLQLPTYAKVHPVFHVSLLKKKVGQHCTTSPSLPPLDSLGQ 955
KYYGPF V KVGAVAY+LQLP A +HPVFHVS LKK +G H P+LP + GQ
Sbjct: 843 RGKYYGPFKVLEKVGAVAYRLQLPEEAAIHPVFHVSQLKKHLGTHAVPMPNLPAVGPDGQ 902
Query: 956 FMVEPVAVLDRRMVKK 1003
EPVAVL RRM+ +
Sbjct: 903 IKTEPVAVLQRRMIPR 918
Score = 42.4 bits (98), Expect(3) = e-101
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 1006 NAAGVEVLVQWTNTLPSEASWEDWDELVKKFPNFKP 1113
N A + L+ W+N P+EA+WED + K FPNF+P
Sbjct: 920 NVAVTQWLILWSNLTPAEATWEDASYIQKVFPNFQP 955
>gb|AAP53789.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1611
Score = 227 bits (579), Expect(3) = 2e-98
Identities = 104/182 (57%), Positives = 132/182 (72%)
Frame = +1
Query: 1 QQQKHETLASPGHLQPLPVPETPWADISMDFIEALPKSEGNTVIWVVVDRLTKYGHFVAL 180
Q K E + PG L PL VP+ W I+MDFIE LPKS+G VI VVVDRLTKY HF+AL
Sbjct: 1240 QITKAEHIHIPGLLNPLEVPDMAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFLAL 1299
Query: 181 KHPFTASQLAQVFISHIYKLHGLPATIVSNRDKVFVSLFWQSLFRIVGTKLQMSTSYHPQ 360
HP+T Q+ Q+F+ +I+KLHG+P IV++RD+VF S F+Q +F+ KL+ ST++HPQ
Sbjct: 1300 SHPYTVEQVVQIFMDNIHKLHGMPMVIVTDRDRVFTSNFFQEIFKTQKVKLRFSTAHHPQ 1359
Query: 361 SDGQTERVNQVLECYLRCKVAQNPHNWVSWLSLAELWYNTHFHTGLKATPFEMLYGYKPP 540
+DGQTERVNQ LE YLR Q P W SWL+LAE WYNT +HT ++ TPF+ LYGY PP
Sbjct: 1360 TDGQTERVNQCLESYLRSMTFQEPQKWFSWLALAEWWYNTTYHTSIQMTPFQALYGYPPP 1419
Query: 541 HL 546
+
Sbjct: 1420 QI 1421
Score = 144 bits (363), Expect(3) = 2e-98
Identities = 72/136 (52%), Positives = 94/136 (69%)
Frame = +2
Query: 596 QDRAQLLRLMK*HLTEAQARIKHYADKHRTERVFVLRDMVYLKVRPYKQLSLSVLNQVKL 775
+D+A +L+ +K + EAQ RIK YADK R+ER L DMVYLK++PY+Q+++ + +KL
Sbjct: 1439 EDKALILQKLKSSIGEAQRRIKFYADKGRSERTLELGDMVYLKLQPYRQVAMGIRGSLKL 1498
Query: 776 LPKYYGPFLVESKVGAVAYKLQLPTYAKVHPVFHVSLLKKKVGQHCTTSPSLPPLDSLGQ 955
KYYGPF V K+GAVAYKLQLP A +HPVFHVS LKK +G P+LP + GQ
Sbjct: 1499 RSKYYGPFKVIEKMGAVAYKLQLPDGAGIHPVFHVSQLKKHLGARAIPMPNLPAIGPDGQ 1558
Query: 956 FMVEPVAVLDRRMVKK 1003
EP AVL RRM+ +
Sbjct: 1559 IKTEPAAVLQRRMIPR 1574
Score = 37.4 bits (85), Expect(3) = 2e-98
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 1027 LVQWTNTLPSEASWEDWDELVKKFPNFKP 1113
L+ W N P+EA+WED + FPNF+P
Sbjct: 1583 LILWENLTPAEATWEDASYIQAAFPNFQP 1611
>emb|CAH66499.1| H0321H01.8 [Oryza sativa Indica Group]
Length = 1602
Score = 243 bits (620), Expect(3) = 2e-98
Identities = 115/180 (63%), Positives = 131/180 (72%)
Frame = +1
Query: 4 QQKHETLASPGHLQPLPVPETPWADISMDFIEALPKSEGNTVIWVVVDRLTKYGHFVALK 183
Q K + L PG LQPLPVPE W +S+DFIE LPKS G I VVVDR +KY HFVALK
Sbjct: 1154 QAKPDRLKYPGLLQPLPVPEGSWQAVSLDFIEGLPKSAGYNCILVVVDRFSKYAHFVALK 1213
Query: 184 HPFTASQLAQVFISHIYKLHGLPATIVSNRDKVFVSLFWQSLFRIVGTKLQMSTSYHPQS 363
HPFTA +AQ ++ HIYKLHGLP TIVS+RDK+F S W+ LF GTKL S++YHPQS
Sbjct: 1214 HPFTAIDVAQAYMFHIYKLHGLPQTIVSDRDKIFTSQLWEQLFLRAGTKLHYSSAYHPQS 1273
Query: 364 DGQTERVNQVLECYLRCKVAQNPHNWVSWLSLAELWYNTHFHTGLKATPFEMLYGYKPPH 543
DGQTERVNQ LE YLRC V P W SWL LAE WYN+ +H+ L TPFE+LYGY P H
Sbjct: 1274 DGQTERVNQCLEIYLRCFVHSTPSKWYSWLHLAEYWYNSTYHSSLGTTPFEVLYGYPPNH 1333
Score = 116 bits (291), Expect(3) = 2e-98
Identities = 67/143 (46%), Positives = 89/143 (62%)
Frame = +2
Query: 575 PITKQFCQDRAQLLRLMK*HLTEAQARIKHYADKHRTERVFVLRDMVYLKVRPYKQLSLS 754
P + +DR + +L++ HL AQ ++KH+ADK R+ R F + D VYLK++PY Q S++
Sbjct: 1344 PELSVWLRDRKFMQQLVQQHLHRAQQQMKHFADKKRSFRQFTIGDWVYLKLQPYVQSSVA 1403
Query: 755 VLNQVKLLPKYYGPFLVESKVGAVAYKLQLPTYAKVHPVFHVSLLKKKVGQHCTTSPSLP 934
KL KYYGPF V K+G VAYKLQLP + VHPVFHVSLLK G T P+
Sbjct: 1404 PRANHKLAFKYYGPFQVIDKLGTVAYKLQLPETSSVHPVFHVSLLKPAKG---FTQPAFL 1460
Query: 935 PLDSLGQFMVEPVAVLDRRMVKK 1003
L S P+A+LD+R+ KK
Sbjct: 1461 QLPSEVVSWQLPLAILDQRLAKK 1483
Score = 49.3 bits (116), Expect(3) = 2e-98
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +1
Query: 985 QKNGEEKNAAGVEVLVQWTNTLPSEASWEDWDELVKKFPNFKP*GHGLSKGGGIVR 1152
Q+ ++ N+ +VL+ W++T+P +A+WED ++L +FPN G +G GIVR
Sbjct: 1478 QRLAKKGNSVITQVLIHWSHTVPEQATWEDLEDLKTRFPNALAWGQAKIQGEGIVR 1533
>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]
Length = 1586
Score = 226 bits (575), Expect(3) = 1e-96
Identities = 100/183 (54%), Positives = 134/183 (73%)
Frame = +1
Query: 1 QQQKHETLASPGHLQPLPVPETPWADISMDFIEALPKSEGNTVIWVVVDRLTKYGHFVAL 180
Q K E + PG L PL VP+ WA I+MDF+E LPKS G VI VVVDRLTKY HF+A+
Sbjct: 1215 QVTKAEHIHIPGLLDPLEVPDMAWAHITMDFVEGLPKSNGKDVILVVVDRLTKYAHFIAM 1274
Query: 181 KHPFTASQLAQVFISHIYKLHGLPATIVSNRDKVFVSLFWQSLFRIVGTKLQMSTSYHPQ 360
HP+T Q+ ++F+++I++LHG+P I+++RD++F S +Q +F+ + +L+ STSYHPQ
Sbjct: 1275 AHPYTVEQVVELFMNNIHRLHGMPMAIITDRDRIFTSQLFQEIFKSMKVRLKFSTSYHPQ 1334
Query: 361 SDGQTERVNQVLECYLRCKVAQNPHNWVSWLSLAELWYNTHFHTGLKATPFEMLYGYKPP 540
+DGQTERVNQ LE YLR Q P W SWL+LAE WYNT +HT ++ TPF+ LYGY PP
Sbjct: 1335 TDGQTERVNQCLESYLRSMTFQEPTRWHSWLALAEWWYNTTYHTSIQMTPFQALYGYPPP 1394
Query: 541 HLN 549
+N
Sbjct: 1395 QIN 1397
Score = 141 bits (355), Expect(3) = 1e-96
Identities = 70/150 (46%), Positives = 97/150 (64%), Gaps = 3/150 (2%)
Frame = +2
Query: 596 QDRAQLLRLMK*HLTEAQARIKHYADKHRTERVFVLRDMVYLKVRPYKQLSLSVLNQVKL 775
+ + +++ +K LTEAQ RIKHYAD++R+ER + DMVYLK++PY+Q + + +KL
Sbjct: 1414 EQKDAIIQKLKYSLTEAQRRIKHYADRNRSERTLAVGDMVYLKLQPYRQTAFGIRGSLKL 1473
Query: 776 LPKYYGPFLVESKVGAVAYKLQLPTYAKVHPVFHVSLLKKKVGQHCTTSPSLPPLDSLGQ 955
K+YGPF + KVG VAYKLQLP + +HPVFHVS LKK +G +LP + GQ
Sbjct: 1474 RSKFYGPFKIMEKVGRVAYKLQLPEGSNIHPVFHVSQLKKHIGSRAVPMANLPSVGPDGQ 1533
Query: 956 FMVEPVAVLDRRMVKK---KMQQGWRYWYN 1036
EPVAVL RRM+ + + Q W+N
Sbjct: 1534 IKTEPVAVLKRRMIPRGGVAVTQWLVLWHN 1563
Score = 36.2 bits (82), Expect(3) = 1e-96
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 1027 LVQWTNTLPSEASWEDWDELVKKFPNFKP 1113
LV W N PSEA+WED + FP+F P
Sbjct: 1558 LVLWHNLSPSEATWEDASMIQSMFPSFNP 1586
>gb|AAV24812.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1475
Score = 228 bits (580), Expect(3) = 1e-96
Identities = 101/183 (55%), Positives = 132/183 (72%)
Frame = +1
Query: 1 QQQKHETLASPGHLQPLPVPETPWADISMDFIEALPKSEGNTVIWVVVDRLTKYGHFVAL 180
Q K E + PG L PL +P+ W I+MDFIE LPKS+G VI VVVDRLTKY HF+AL
Sbjct: 1104 QITKSEHVHIPGLLNPLEIPDMAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFIAL 1163
Query: 181 KHPFTASQLAQVFISHIYKLHGLPATIVSNRDKVFVSLFWQSLFRIVGTKLQMSTSYHPQ 360
HP+ Q+ + F+++I+KLHG+P I+++RD++F S +Q +F+ + KL+ ST+YHPQ
Sbjct: 1164 AHPYDVEQVVEAFMNNIHKLHGMPMVIITDRDRIFTSSLFQEIFKAMKVKLRFSTAYHPQ 1223
Query: 361 SDGQTERVNQVLECYLRCKVAQNPHNWVSWLSLAELWYNTHFHTGLKATPFEMLYGYKPP 540
DGQTERVNQ LE YLR Q PH W SWL+LAE WYNT FHT ++ TPF+ +YGY PP
Sbjct: 1224 MDGQTERVNQCLESYLRNMTFQEPHKWYSWLALAEWWYNTTFHTAIQMTPFKAMYGYSPP 1283
Query: 541 HLN 549
+N
Sbjct: 1284 QIN 1286
Score = 138 bits (348), Expect(3) = 1e-96
Identities = 67/137 (48%), Positives = 95/137 (69%)
Frame = +2
Query: 596 QDRAQLLRLMK*HLTEAQARIKHYADKHRTERVFVLRDMVYLKVRPYKQLSLSVLNQVKL 775
+++ +L +K L +AQ R+K++ADK+RTER + DMVYLK++PY+Q + + +KL
Sbjct: 1303 EEKEAILNKLKNSLADAQHRMKYFADKNRTERNLEVGDMVYLKLKPYRQSAFGIRGSLKL 1362
Query: 776 LPKYYGPFLVESKVGAVAYKLQLPTYAKVHPVFHVSLLKKKVGQHCTTSPSLPPLDSLGQ 955
K+YGPF V K+G +AYKLQLP A++HPVFHVS LKK +G+H +LP + GQ
Sbjct: 1363 RSKFYGPFKVLQKIGQLAYKLQLPDDAQIHPVFHVSQLKKHLGKHAIPMSNLPSVGPDGQ 1422
Query: 956 FMVEPVAVLDRRMVKKK 1006
EP+AVL RRMV +K
Sbjct: 1423 IKTEPLAVLQRRMVPRK 1439
Score = 36.6 bits (83), Expect(3) = 1e-96
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 1003 KNAAGVEVLVQWTNTLPSEASWEDWDELVKKFPNFKP 1113
K A + L+ W N P+EA+WED + FP+F P
Sbjct: 1439 KGVAVTQWLILWQNLSPAEATWEDASVIQAMFPSFNP 1475