BLASTX nr result

ID: Panax21_contig00021297 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00021297
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002317750.1| predicted protein [Populus trichocarpa] gi|2...    64   2e-08
gb|ABK95840.1| unknown [Populus trichocarpa]                           64   2e-08
ref|XP_002513582.1| polypyrimidine tract binding protein, putati...    62   4e-08
ref|XP_002322027.1| predicted protein [Populus trichocarpa] gi|2...    62   4e-08
ref|XP_004168482.1| PREDICTED: polypyrimidine tract-binding prot...    61   1e-07

>ref|XP_002317750.1| predicted protein [Populus trichocarpa] gi|222858423|gb|EEE95970.1|
           predicted protein [Populus trichocarpa]
          Length = 350

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/33 (96%), Positives = 32/33 (96%)
 Frame = +3

Query: 84  SVCLDGKKLEPESNVLLASIENMQYAVTLDVLH 182
           SV LDGKKLEPESNVLLASIENMQYAVTLDVLH
Sbjct: 222 SVGLDGKKLEPESNVLLASIENMQYAVTLDVLH 254


>gb|ABK95840.1| unknown [Populus trichocarpa]
          Length = 442

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/33 (96%), Positives = 32/33 (96%)
 Frame = +3

Query: 84  SVCLDGKKLEPESNVLLASIENMQYAVTLDVLH 182
           SV LDGKKLEPESNVLLASIENMQYAVTLDVLH
Sbjct: 231 SVGLDGKKLEPESNVLLASIENMQYAVTLDVLH 263


>ref|XP_002513582.1| polypyrimidine tract binding protein, putative [Ricinus communis]
           gi|223547490|gb|EEF48985.1| polypyrimidine tract binding
           protein, putative [Ricinus communis]
          Length = 447

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +3

Query: 84  SVCLDGKKLEPESNVLLASIENMQYAVTLDVLH 182
           +V LDGKKLEPESNVLLASIENMQYAVTLDVLH
Sbjct: 231 TVGLDGKKLEPESNVLLASIENMQYAVTLDVLH 263


>ref|XP_002322027.1| predicted protein [Populus trichocarpa] gi|222869023|gb|EEF06154.1|
           predicted protein [Populus trichocarpa]
          Length = 447

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +3

Query: 84  SVCLDGKKLEPESNVLLASIENMQYAVTLDVLH 182
           S+ LDGKKLEPESNVLLASIENMQYAVTLDVLH
Sbjct: 231 SMGLDGKKLEPESNVLLASIENMQYAVTLDVLH 263


>ref|XP_004168482.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
           [Cucumis sativus]
          Length = 457

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = +3

Query: 84  SVCLDGKKLEPESNVLLASIENMQYAVTLDVLH 182
           +V LDGKKLEPESNVLLASIENMQYAVTL+VLH
Sbjct: 235 TVGLDGKKLEPESNVLLASIENMQYAVTLEVLH 267


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