BLASTX nr result

ID: Panax21_contig00021280 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00021280
         (629 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004162101.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-spl...   324   9e-87
ref|XP_004142129.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   324   9e-87
ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   321   6e-86
ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   321   6e-86
ref|XP_002265479.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   317   1e-84

>ref|XP_004162101.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22
           homolog, partial [Cucumis sativus]
          Length = 780

 Score =  324 bits (830), Expect = 9e-87
 Identities = 163/208 (78%), Positives = 176/208 (84%)
 Frame = +1

Query: 4   KEGTGTINIDAVANSGRSGGVYIPPFKFARMMKEVQDKRSVEYQRMTWDALRKSINGLVN 183
           K+    +N D+ +N G+SGGVYIPPFK ARMMKEVQDK S+EYQR+TWDALRKSINGLVN
Sbjct: 205 KQTENNLNPDS-SNLGKSGGVYIPPFKLARMMKEVQDKSSIEYQRLTWDALRKSINGLVN 263

Query: 184 KVNSTNMKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGD 363
           KVN+TN+KNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGD
Sbjct: 264 KVNATNIKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGD 323

Query: 364 XXXXXXXXXXXXAYKRNDKPQLLAAVKFIAHLVNQQIVHELIAXXXXXXXXXNPTDDSVE 543
                       AYKRNDKPQLLAAVKFIAHLVNQQ+ HE+IA         NPTDDSVE
Sbjct: 324 LLLRRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPTDDSVE 383

Query: 544 VAVGFVTECGSILQDLCPRGLHGIFERF 627
           VAVGFVTECGSIL+DL P+GLHGIFERF
Sbjct: 384 VAVGFVTECGSILKDLSPKGLHGIFERF 411


>ref|XP_004142129.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Cucumis sativus]
          Length = 797

 Score =  324 bits (830), Expect = 9e-87
 Identities = 163/208 (78%), Positives = 176/208 (84%)
 Frame = +1

Query: 4   KEGTGTINIDAVANSGRSGGVYIPPFKFARMMKEVQDKRSVEYQRMTWDALRKSINGLVN 183
           K+    +N D+ +N G+SGGVYIPPFK ARMMKEVQDK S+EYQR+TWDALRKSINGLVN
Sbjct: 205 KQTENNLNPDS-SNLGKSGGVYIPPFKLARMMKEVQDKSSIEYQRLTWDALRKSINGLVN 263

Query: 184 KVNSTNMKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGD 363
           KVN+TN+KNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGD
Sbjct: 264 KVNATNIKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGD 323

Query: 364 XXXXXXXXXXXXAYKRNDKPQLLAAVKFIAHLVNQQIVHELIAXXXXXXXXXNPTDDSVE 543
                       AYKRNDKPQLLAAVKFIAHLVNQQ+ HE+IA         NPTDDSVE
Sbjct: 324 LLLRRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPTDDSVE 383

Query: 544 VAVGFVTECGSILQDLCPRGLHGIFERF 627
           VAVGFVTECGSIL+DL P+GLHGIFERF
Sbjct: 384 VAVGFVTECGSILKDLSPKGLHGIFERF 411


>ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
          Length = 860

 Score =  321 bits (823), Expect = 6e-86
 Identities = 164/204 (80%), Positives = 172/204 (84%)
 Frame = +1

Query: 16  GTINIDAVANSGRSGGVYIPPFKFARMMKEVQDKRSVEYQRMTWDALRKSINGLVNKVNS 195
           G +N D V+N G+SGGVYIPPFK A MMKEVQDK SVEYQR+TWDALRKSINGLVNKVN+
Sbjct: 272 GNLNGD-VSNLGKSGGVYIPPFKMAMMMKEVQDKSSVEYQRLTWDALRKSINGLVNKVNA 330

Query: 196 TNMKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDXXXX 375
           TN+KNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGD    
Sbjct: 331 TNIKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLR 390

Query: 376 XXXXXXXXAYKRNDKPQLLAAVKFIAHLVNQQIVHELIAXXXXXXXXXNPTDDSVEVAVG 555
                   AYKRNDKPQLLAAVKFIAHLVNQQ  HE+IA          PTDDSVEVAVG
Sbjct: 391 RIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQAAHEIIALELLTVLLEKPTDDSVEVAVG 450

Query: 556 FVTECGSILQDLCPRGLHGIFERF 627
           FVTECGSILQDL P+GLHGIFERF
Sbjct: 451 FVTECGSILQDLSPKGLHGIFERF 474


>ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
          Length = 871

 Score =  321 bits (823), Expect = 6e-86
 Identities = 164/204 (80%), Positives = 172/204 (84%)
 Frame = +1

Query: 16  GTINIDAVANSGRSGGVYIPPFKFARMMKEVQDKRSVEYQRMTWDALRKSINGLVNKVNS 195
           G +N DA +N G+SGGVYIPPFK A MMKEVQDK SVEYQR+TWDALRKSINGLVNKVN+
Sbjct: 288 GNLNGDA-SNLGKSGGVYIPPFKMAMMMKEVQDKSSVEYQRLTWDALRKSINGLVNKVNA 346

Query: 196 TNMKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDXXXX 375
           TN+KNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGD    
Sbjct: 347 TNIKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDLLLR 406

Query: 376 XXXXXXXXAYKRNDKPQLLAAVKFIAHLVNQQIVHELIAXXXXXXXXXNPTDDSVEVAVG 555
                   AYKRNDKPQLLAAVKFIAHLVNQQ  HE+IA          PTDDSVEVAVG
Sbjct: 407 RIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQAAHEIIALELLTVLLEKPTDDSVEVAVG 466

Query: 556 FVTECGSILQDLCPRGLHGIFERF 627
           FVTECGSILQDL P+GLHGIFERF
Sbjct: 467 FVTECGSILQDLSPKGLHGIFERF 490


>ref|XP_002265479.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Vitis vinifera]
          Length = 785

 Score =  317 bits (811), Expect = 1e-84
 Identities = 160/203 (78%), Positives = 172/203 (84%)
 Frame = +1

Query: 19  TINIDAVANSGRSGGVYIPPFKFARMMKEVQDKRSVEYQRMTWDALRKSINGLVNKVNST 198
           ++N D V+N GRSGGVYIPPFK A+MMKEVQDK S+EYQR+TWDALRKSINGLVNKVN+T
Sbjct: 193 SLNAD-VSNWGRSGGVYIPPFKLAQMMKEVQDKSSIEYQRLTWDALRKSINGLVNKVNAT 251

Query: 199 NMKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGDXXXXX 378
           N+KNIIPELF ENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVG+     
Sbjct: 252 NIKNIIPELFGENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGELLMRR 311

Query: 379 XXXXXXXAYKRNDKPQLLAAVKFIAHLVNQQIVHELIAXXXXXXXXXNPTDDSVEVAVGF 558
                  AYKRNDK QLLAAVKFIAHLVNQQ+ HE+IA         NPTDDSVEVAVGF
Sbjct: 312 IVLQFKRAYKRNDKHQLLAAVKFIAHLVNQQVAHEIIALELLALMLENPTDDSVEVAVGF 371

Query: 559 VTECGSILQDLCPRGLHGIFERF 627
           V ECGSILQDL P+GLHGIFERF
Sbjct: 372 VKECGSILQDLSPKGLHGIFERF 394


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