BLASTX nr result

ID: Panax21_contig00021225 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00021225
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281316.2| PREDICTED: uncharacterized protein LOC100249...   166   2e-39
ref|XP_004167945.1| PREDICTED: uncharacterized LOC101209764 [Cuc...   142   2e-32
ref|XP_004139426.1| PREDICTED: uncharacterized protein LOC101209...   142   2e-32
ref|XP_002324405.1| predicted protein [Populus trichocarpa] gi|2...   141   5e-32
ref|XP_002515586.1| HIV-1 rev binding protein, hrbl, putative [R...   141   6e-32

>ref|XP_002281316.2| PREDICTED: uncharacterized protein LOC100249171 [Vitis vinifera]
           gi|297738855|emb|CBI28100.3| unnamed protein product
           [Vitis vinifera]
          Length = 759

 Score =  166 bits (420), Expect = 2e-39
 Identities = 83/128 (64%), Positives = 96/128 (75%), Gaps = 6/128 (4%)
 Frame = +1

Query: 1   RSFDKPPRVKMGETEDLSENRKMDSYLGGSRSPLYDDAYERRYSDKPSPGGRSDDRNYKN 180
           RSFDKPPRVKMG+ E+  ENRKMD+Y GGSRSP Y+D+Y+RRYSD+ SPGGRSDD+N++ 
Sbjct: 126 RSFDKPPRVKMGDKEEPYENRKMDNYQGGSRSPPYEDSYDRRYSDQRSPGGRSDDKNFRY 185

Query: 181 SYDERRSPGSD------SDYRRSPARTEIVNDWRREDRFSRKESEDSRISDGGSKLEGSS 342
            YD RRSPGSD       DYRRSP R EIVNDWRREDRF      + R SD  +  EG S
Sbjct: 186 GYDGRRSPGSDLENRQHGDYRRSPVRPEIVNDWRREDRFG-----NGRKSDRETNREGRS 240

Query: 343 PDRQRDLD 366
           PD Q+DLD
Sbjct: 241 PDHQKDLD 248


>ref|XP_004167945.1| PREDICTED: uncharacterized LOC101209764 [Cucumis sativus]
          Length = 711

 Score =  142 bits (359), Expect = 2e-32
 Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 7/129 (5%)
 Frame = +1

Query: 1   RSFDKPPRVKMGETEDLSENRKMDSYLGGSRSPLYDDAYERRYSDKPSPGGRSDDRNYKN 180
           ++FD+PPRVK GE ED  E R+ D+Y GGSRSP Y+D   RRY+++ SPGGR        
Sbjct: 126 KNFDRPPRVKSGEKEDTYETRRADTYQGGSRSPPYED---RRYNERSSPGGR-------- 174

Query: 181 SYDERRSPGSD------SDYRRSPARTEIVNDWRREDRFSR-KESEDSRISDGGSKLEGS 339
           ++DERRSPGSD       D+R+SPAR+E+VNDWRREDRF   K  ED R+SDG SK+ G 
Sbjct: 175 NFDERRSPGSDHENRQFGDFRKSPARSEVVNDWRREDRFGNGKRVEDGRLSDGDSKIGGR 234

Query: 340 SPDRQRDLD 366
           SPDR  DLD
Sbjct: 235 SPDRPNDLD 243


>ref|XP_004139426.1| PREDICTED: uncharacterized protein LOC101209764 [Cucumis sativus]
          Length = 630

 Score =  142 bits (359), Expect = 2e-32
 Identities = 74/129 (57%), Positives = 91/129 (70%), Gaps = 7/129 (5%)
 Frame = +1

Query: 1   RSFDKPPRVKMGETEDLSENRKMDSYLGGSRSPLYDDAYERRYSDKPSPGGRSDDRNYKN 180
           ++FD+PPRVK GE ED  E R+ D+Y GGSRSP Y+D   RRY+++ SPGGR        
Sbjct: 130 KNFDRPPRVKSGEKEDTYETRRADTYQGGSRSPPYED---RRYNERSSPGGR-------- 178

Query: 181 SYDERRSPGSD------SDYRRSPARTEIVNDWRREDRFSR-KESEDSRISDGGSKLEGS 339
           ++DERRSPGSD       D+R+SPAR+E+VNDWRREDRF   K  ED R+SDG SK+ G 
Sbjct: 179 NFDERRSPGSDHENRQFGDFRKSPARSEVVNDWRREDRFGNGKRVEDGRLSDGDSKIGGR 238

Query: 340 SPDRQRDLD 366
           SPDR  DLD
Sbjct: 239 SPDRPNDLD 247


>ref|XP_002324405.1| predicted protein [Populus trichocarpa] gi|222865839|gb|EEF02970.1|
           predicted protein [Populus trichocarpa]
          Length = 649

 Score =  141 bits (356), Expect = 5e-32
 Identities = 71/127 (55%), Positives = 91/127 (71%), Gaps = 7/127 (5%)
 Frame = +1

Query: 1   RSFDKPPRVKMGETEDLSENRKMDSYLGGSRSPLYDDAYERRYSDKPSPGGRSDDRNYKN 180
           R++ KPP        + SENRK D+Y GGSRSP Y+D +E RY+++ SPGGRSDD+  + 
Sbjct: 126 RNYGKPP--------NFSENRKTDAYQGGSRSPPYEDTHEHRYNERSSPGGRSDDKYSRY 177

Query: 181 SYDERRSPGSD------SDYRRSPARTEIVNDWRREDRFSR-KESEDSRISDGGSKLEGS 339
           SYDERRSPG D      +DY+RSPAR EI+NDWRREDRF   ++ ED RISDG  K+EG 
Sbjct: 178 SYDERRSPGYDQESRQYNDYKRSPARPEIINDWRREDRFGNGRKVEDRRISDGDPKVEGR 237

Query: 340 SPDRQRD 360
           SP+R ++
Sbjct: 238 SPERPKE 244


>ref|XP_002515586.1| HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
           gi|223545530|gb|EEF47035.1| HIV-1 rev binding protein,
           hrbl, putative [Ricinus communis]
          Length = 227

 Score =  141 bits (355), Expect = 6e-32
 Identities = 75/127 (59%), Positives = 89/127 (70%), Gaps = 7/127 (5%)
 Frame = +1

Query: 1   RSFDKPPRVKMGETEDLSENRKMDSYLGGSRSPLYDDAYERRYSDKPSPGGRSDDRNYKN 180
           R+  KPP VK+G+ ED        SY GGSRSP Y+D+YERRYS+  SPGGRSDDRN + 
Sbjct: 62  RNSGKPPSVKLGDKED--------SYHGGSRSPPYEDSYERRYSEMSSPGGRSDDRNSRY 113

Query: 181 SYDERRSPGSD------SDYRRSPARTEIVNDWRREDRFSR-KESEDSRISDGGSKLEGS 339
            YDERRSPG D      +DYRRSP   E+VNDWRREDRF   K ++D R+SDG SKLE  
Sbjct: 114 GYDERRSPGYDQESRQYNDYRRSP---EVVNDWRREDRFGNGKRADDRRVSDGESKLESR 170

Query: 340 SPDRQRD 360
           SP+R +D
Sbjct: 171 SPERPKD 177


Top