BLASTX nr result

ID: Panax21_contig00021158 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00021158
         (2117 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   112   1e-22
ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...   111   3e-22
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...   110   7e-22
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...   109   1e-21
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop...   100   1e-18

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score =  112 bits (281), Expect(2) = 1e-22
 Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 1/244 (0%)
 Frame = +3

Query: 33  SPLASFTLSPLITNSGLGPWATVYHIIRNSAWSLPSSNHNNLIEFREGFDYTRLCDSSSS 212
           SPLA       I +SG+   A V  +I+NS W  P++         E             
Sbjct: 252 SPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQK 311

Query: 213 DQIFWEDTKAIEVKASSIWRSIKRVGMDVPWAKLVWHKLLIPWYSFNLWLSFHKGLRTLD 392
           D++ W D+          W  ++R    V W  +VW K  +P +SF LW++  + L T D
Sbjct: 312 DELVWLDSPNHRFSVKVAWEQLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQD 371

Query: 393 RLAGFGIQVNPLCVLCRNDIETFDHLFFHCNYSYRVLISVLRYCGWRGTSRSWVS-ITDF 569
           +L  FGI     C LC  + E  +HLFF C+Y+  +   V   C     ++ W   I   
Sbjct: 372 KLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWA 431

Query: 570 LIGYPRENFLHSLIHLAFAAVVYGIWRERSARIFSKKAIPVRNMVEDILNLIKCKLHNNL 749
            + +  ++F++    L+FAA VY +W+ER+ARIF+  +    N+V   LN I+C + + L
Sbjct: 432 TVSWHGKSFVNFSCKLSFAATVYHVWQERNARIFAGMS-RTPNLV---LNQIECIIRDKL 487

Query: 750 RFQR 761
              R
Sbjct: 488 DLMR 491



 Score = 21.9 bits (45), Expect(2) = 1e-22
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1   TSLWFDPW 24
           TSLWFD W
Sbjct: 241 TSLWFDNW 248


>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score =  111 bits (278), Expect(2) = 3e-22
 Identities = 74/244 (30%), Positives = 114/244 (46%), Gaps = 1/244 (0%)
 Frame = +3

Query: 33   SPLASFTLSPLITNSGLGPWATVYHIIRNSAWSLPSSNHNNLIEFREGFDYTRLCDSSSS 212
            SPLA       I +SG+   A V  +I+NS W  P++         E             
Sbjct: 1125 SPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQK 1184

Query: 213  DQIFWEDTKAIEVKASSIWRSIKRVGMDVPWAKLVWHKLLIPWYSFNLWLSFHKGLRTLD 392
            D+I W D+          W  ++R    V W  +VW K  +P +SF LW++  + L T D
Sbjct: 1185 DEIVWLDSPNHRFLVKVAWEHLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQD 1244

Query: 393  RLAGFGIQVNPLCVLCRNDIETFDHLFFHCNYSYRVLISVLRYCGWRGTSRSWVS-ITDF 569
            +L  FGI     C LC  + E  +HLFF C+Y+  +   V   C     ++ W   I   
Sbjct: 1245 KLYRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWA 1304

Query: 570  LIGYPRENFLHSLIHLAFAAVVYGIWRERSARIFSKKAIPVRNMVEDILNLIKCKLHNNL 749
             + +  ++F++    L+FAA VY +W+ER+ARIF+  +    N+V   LN I+C + + L
Sbjct: 1305 TVSWHGKSFVNFSRKLSFAATVYHVWQERNARIFAGMS-RTPNLV---LNQIECIIRDKL 1360

Query: 750  RFQR 761
               R
Sbjct: 1361 DLMR 1364



 Score = 21.9 bits (45), Expect(2) = 3e-22
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1    TSLWFDPW 24
            TSLWFD W
Sbjct: 1114 TSLWFDNW 1121


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
            predicted protein [Populus trichocarpa]
          Length = 1046

 Score =  110 bits (275), Expect(2) = 7e-22
 Identities = 73/244 (29%), Positives = 112/244 (45%), Gaps = 1/244 (0%)
 Frame = +3

Query: 33   SPLASFTLSPLITNSGLGPWATVYHIIRNSAWSLPSSNHNNLIEFREGFDYTRLCDSSSS 212
            SPLA       I +SG+   A V  +I+NS W  P++         E             
Sbjct: 785  SPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQK 844

Query: 213  DQIFWEDTKAIEVKASSIWRSIKRVGMDVPWAKLVWHKLLIPWYSFNLWLSFHKGLRTLD 392
            D+I W D+          W  ++R    V W  +VW K  +P +SF LW+   + L T D
Sbjct: 845  DEIIWLDSPNHRFSVKVAWEQLRRHRQLVEWHDIVWFKNAVPRHSFLLWMVVQQKLTTQD 904

Query: 393  RLAGFGIQVNPLCVLCRNDIETFDHLFFHCNYSYRVLISVLRYCGWRGTSRSWVS-ITDF 569
            +L  FGI     C LC  + E  +HLFF C+Y+  +   V   C     ++ W   I   
Sbjct: 905  KLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWA 964

Query: 570  LIGYPRENFLHSLIHLAFAAVVYGIWRERSARIFSKKAIPVRNMVEDILNLIKCKLHNNL 749
             + +  ++F++    L+FAA VY +W+ER+ARIF+  +    N+V    N I+C + + L
Sbjct: 965  TVSWHGKSFINFSRKLSFAATVYHVWQERNARIFAGLS-RTSNLV---FNQIECIIRDKL 1020

Query: 750  RFQR 761
               R
Sbjct: 1021 DLMR 1024



 Score = 21.9 bits (45), Expect(2) = 7e-22
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1   TSLWFDPW 24
           TSLWFD W
Sbjct: 774 TSLWFDNW 781


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
           predicted protein [Populus trichocarpa]
          Length = 331

 Score =  109 bits (272), Expect(2) = 1e-21
 Identities = 73/244 (29%), Positives = 112/244 (45%), Gaps = 1/244 (0%)
 Frame = +3

Query: 33  SPLASFTLSPLITNSGLGPWATVYHIIRNSAWSLPSSNHNNLIEFREGFDYTRLCDSSSS 212
           SPLA       I +SG+   A V  +I+NS W  P++         E             
Sbjct: 70  SPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQK 129

Query: 213 DQIFWEDTKAIEVKASSIWRSIKRVGMDVPWAKLVWHKLLIPWYSFNLWLSFHKGLRTLD 392
           D+I W D+          W  ++R    V W  +VW K  +P +SF LW+   + L T D
Sbjct: 130 DEIVWLDSPNHRFSVKVAWEQLRRHRHMVEWHDIVWFKNAVPRHSFLLWMVVQQKLTTQD 189

Query: 393 RLAGFGIQVNPLCVLCRNDIETFDHLFFHCNYSYRVLISVLRYCGWRGTSRSWVS-ITDF 569
           +L  FGI     C LC  + E  +HLFF C+Y+  +   V   C     ++ W   I   
Sbjct: 190 KLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWA 249

Query: 570 LIGYPRENFLHSLIHLAFAAVVYGIWRERSARIFSKKAIPVRNMVEDILNLIKCKLHNNL 749
            + +  ++F++    L+FAA VY +W+ER+ARIF+  +    N+V    N I+C + + L
Sbjct: 250 TVSWHGKSFVNFSRKLSFAATVYHVWQERNARIFAGLS-RTSNLV---FNQIECIIRDKL 305

Query: 750 RFQR 761
              R
Sbjct: 306 DLMR 309



 Score = 21.9 bits (45), Expect(2) = 1e-21
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1  TSLWFDPW 24
          TSLWFD W
Sbjct: 59 TSLWFDNW 66


>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
          Length = 278

 Score =  100 bits (250), Expect = 1e-18
 Identities = 63/214 (29%), Positives = 99/214 (46%), Gaps = 4/214 (1%)
 Frame = +3

Query: 78  GLGPWATVYHIIRNSAWSLPSSNHNNLIEFREGFDYTRLCDSSSSDQIFW---EDTKAIE 248
           G+   ATV  ++         ++  N IE     +  R   S  SD+  W   ED+    
Sbjct: 35  GIATQATVAEVLDTHRRKRHRADFLNQIE--NHIELVRQARSQESDRSLWKQKEDSFKGS 92

Query: 249 VKASSIWRSIKRVGMDVPWAKLVWHKLLIPWYSFNLWLSFHKGLRTLDRLAGFGIQVNPL 428
             +   W+ I+ +  +  W + VW     P YSF  WL+FH  L T DRL  +  +    
Sbjct: 93  FSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWLAFHNRLATGDRLYKWNSEARAT 152

Query: 429 CVLCRNDIETFDHLFFHCNYSYRVLISVLRYCGWRGTSRSWVSITDFLIGYPRENFLHSL 608
           CV C  ++ET DHLFF C YS ++ I++ +         SW  IT  L+    + +LH  
Sbjct: 153 CVFCDEELETRDHLFFSCPYSSQIWIALAKGLLNGRNVSSWSLITPHLLD-SSQPYLHVF 211

Query: 609 -IHLAFAAVVYGIWRERSARIFSKKAIPVRNMVE 707
            +   F A+++ +WRER+ R   + AIP   + +
Sbjct: 212 TLRYTFQALIHSLWRERNGRRHGEPAIPASKLTK 245


Top