BLASTX nr result

ID: Panax21_contig00021148 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00021148
         (1141 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34639.3| unnamed protein product [Vitis vinifera]              301   2e-79
ref|XP_004170627.1| PREDICTED: LOW QUALITY PROTEIN: nucleoporin ...   291   3e-76
ref|XP_002277144.1| PREDICTED: nuclear pore complex protein Nup9...   284   3e-74
ref|XP_004148101.1| PREDICTED: nucleoporin nup189-like [Cucumis ...   281   2e-73
ref|XP_002317654.1| predicted protein [Populus trichocarpa] gi|2...   281   3e-73

>emb|CBI34639.3| unnamed protein product [Vitis vinifera]
          Length = 1047

 Score =  301 bits (772), Expect = 2e-79
 Identities = 152/269 (56%), Positives = 192/269 (71%)
 Frame = +2

Query: 2    ENPRSLVIGPTEEWNLMANFENSSVAKNTSIHVYENGNVSVNVSAPGVDGSLYQNKDGNS 181
            ENPRSLVI P E+W+L +N E +S  K  S  V+ENG VS      G++GS   +KD N 
Sbjct: 765  ENPRSLVIRPMEQWSLRSNAEKTSPLKEASKPVHENGKVSEE----GLNGSNAGDKDANL 820

Query: 182  DQTSTSKDSAASAEHSHKPDGVHDDHLAPKGDSAIVDELTLKITYSFSSMGFSGGVDVMK 361
             +   +K+   + + + KP+GVHDDH   KGDS I            +++ +  G D+  
Sbjct: 821  VENGLAKERIHTMKPNQKPNGVHDDHSIQKGDSYIT---LTGHRAGEAAIVYEHGADIEA 877

Query: 362  LMPKIRHTDYYIEPRIEELAVKEISESGFCSNVKDFVVGWLGYGNIKFLGETDVRELDIE 541
            LMPK+R +DYY EPRI+ELA KE +E GFC  VKDFVVG  GYG+IKF+GETDVR LD+E
Sbjct: 878  LMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFMGETDVRRLDLE 937

Query: 542  SHVQFNDREVVVYMDETKKPLVGQGLNKPAEITLCNIKCIDKKTGKQYIDGPKVDMYKEM 721
            S VQFN+REV+VYMD++KKP VGQGLNKPAE+TL NIKC DKKTG QY +GPK+  YKEM
Sbjct: 938  SLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYTEGPKIGKYKEM 997

Query: 722  LMKKTAEQGAEFVSYDPVQGDWKFKVQHF 808
            L +K  +QGAEFVSYDP++G+WKF+V HF
Sbjct: 998  LKRKAEDQGAEFVSYDPMKGEWKFRVNHF 1026


>ref|XP_004170627.1| PREDICTED: LOW QUALITY PROTEIN: nucleoporin NUP145-like [Cucumis
           sativus]
          Length = 362

 Score =  291 bits (744), Expect = 3e-76
 Identities = 148/274 (54%), Positives = 195/274 (71%), Gaps = 5/274 (1%)
 Frame = +2

Query: 2   ENPRSLVIGPTEEWNLMANFENSSVAKNTSIHVYENGNVSVNVSAPGVDGSLYQNKDGNS 181
           ENPR+LVI PT++W    N + S  +K+TS+   ENG V+   S+   +    ++ +GN 
Sbjct: 87  ENPRALVIRPTDQWPSKGNLDKSLPSKDTSVR--ENGKVAERTSSAVNN---LKDTNGNV 141

Query: 182 DQTSTSKDSAASAEHSHKPDGVHDDHLAPKGDSAIVDELTLKITYSFSSMG-----FSGG 346
            +  TSK++    + + KP+GVH+DH APK D        L  T++    G     +  G
Sbjct: 142 VENGTSKENIHLNKVNXKPNGVHEDHSAPKED--------LYRTFAGHRAGEAAIVYEHG 193

Query: 347 VDVMKLMPKIRHTDYYIEPRIEELAVKEISESGFCSNVKDFVVGWLGYGNIKFLGETDVR 526
            D+  LMPK+RH+DYY EP+I+ELA KE +E GFC +VKDFVVG  GYG+IKF GETDVR
Sbjct: 194 ADIEALMPKLRHSDYYTEPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFFGETDVR 253

Query: 527 ELDIESHVQFNDREVVVYMDETKKPLVGQGLNKPAEITLCNIKCIDKKTGKQYIDGPKVD 706
            LD+ES VQFN+REV+VY+DE+KKP  GQGLNKPAE+T+ NIKC+DK+TG QY +GPKV+
Sbjct: 254 RLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNIKCVDKQTGHQYTEGPKVE 313

Query: 707 MYKEMLMKKTAEQGAEFVSYDPVQGDWKFKVQHF 808
            YKE+L KKT  QGAEFVSYDPV+G+WKF+V+HF
Sbjct: 314 KYKELLRKKTEAQGAEFVSYDPVKGEWKFRVEHF 347


>ref|XP_002277144.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform 1
            [Vitis vinifera]
          Length = 1013

 Score =  284 bits (726), Expect = 3e-74
 Identities = 145/269 (53%), Positives = 182/269 (67%)
 Frame = +2

Query: 2    ENPRSLVIGPTEEWNLMANFENSSVAKNTSIHVYENGNVSVNVSAPGVDGSLYQNKDGNS 181
            ENPRSLVI P E+W+L +N E +S  K  S  V+EN N+  N                  
Sbjct: 748  ENPRSLVIRPMEQWSLRSNAEKTSPLKEASKPVHENANLVEN------------------ 789

Query: 182  DQTSTSKDSAASAEHSHKPDGVHDDHLAPKGDSAIVDELTLKITYSFSSMGFSGGVDVMK 361
                 +K+   + + + KP+GVHDDH   KGDS I            +++ +  G D+  
Sbjct: 790  ---GLAKERIHTMKPNQKPNGVHDDHSIQKGDSYIT---LTGHRAGEAAIVYEHGADIEA 843

Query: 362  LMPKIRHTDYYIEPRIEELAVKEISESGFCSNVKDFVVGWLGYGNIKFLGETDVRELDIE 541
            LMPK+R +DYY EPRI+ELA KE +E GFC  VKDFVVG  GYG+IKF+GETDVR LD+E
Sbjct: 844  LMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFMGETDVRRLDLE 903

Query: 542  SHVQFNDREVVVYMDETKKPLVGQGLNKPAEITLCNIKCIDKKTGKQYIDGPKVDMYKEM 721
            S VQFN+REV+VYMD++KKP VGQGLNKPAE+TL NIKC DKKTG QY +GPK+  YKEM
Sbjct: 904  SLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYTEGPKIGKYKEM 963

Query: 722  LMKKTAEQGAEFVSYDPVQGDWKFKVQHF 808
            L +K  +QGAEFVSYDP++G+WKF+V HF
Sbjct: 964  LKRKAEDQGAEFVSYDPMKGEWKFRVNHF 992


>ref|XP_004148101.1| PREDICTED: nucleoporin nup189-like [Cucumis sativus]
          Length = 994

 Score =  281 bits (720), Expect = 2e-73
 Identities = 146/274 (53%), Positives = 186/274 (67%), Gaps = 5/274 (1%)
 Frame = +2

Query: 2    ENPRSLVIGPTEEWNLMANFENSSVAKNTSIHVYENGNVSVNVSAPGVDGSLYQNKDGNS 181
            ENPR+LVI PT++W    N + S  +K+TS+   ENGNV  N                  
Sbjct: 737  ENPRALVIRPTDQWPSKGNLDKSLPSKDTSVR--ENGNVVEN------------------ 776

Query: 182  DQTSTSKDSAASAEHSHKPDGVHDDHLAPKGDSAIVDELTLKITYSFSSMG-----FSGG 346
                TSK++    + + KP+GVH+DH APK D        L  T++    G     +  G
Sbjct: 777  ---GTSKENIHLNKVNQKPNGVHEDHSAPKED--------LYRTFAGHRAGEAAIVYEHG 825

Query: 347  VDVMKLMPKIRHTDYYIEPRIEELAVKEISESGFCSNVKDFVVGWLGYGNIKFLGETDVR 526
             D+  LMPK+ H+DYY EP+I+ELA KE +E GFC +VKDFVVG  GYG+IKF GETDVR
Sbjct: 826  ADIEALMPKLLHSDYYTEPKIQELAAKERAEPGFCRHVKDFVVGRHGYGSIKFFGETDVR 885

Query: 527  ELDIESHVQFNDREVVVYMDETKKPLVGQGLNKPAEITLCNIKCIDKKTGKQYIDGPKVD 706
             LD+ES VQFN+REV+VY+DE+KKP  GQGLNKPAE+T+ NIKC+DK+TG QY +GPKV+
Sbjct: 886  RLDLESIVQFNNREVIVYLDESKKPPCGQGLNKPAEVTILNIKCVDKQTGHQYTEGPKVE 945

Query: 707  MYKEMLMKKTAEQGAEFVSYDPVQGDWKFKVQHF 808
             YKE+L KKT  QGAEFVSYDPV+G+WKF+V+HF
Sbjct: 946  KYKELLRKKTEAQGAEFVSYDPVKGEWKFRVEHF 979


>ref|XP_002317654.1| predicted protein [Populus trichocarpa] gi|222860719|gb|EEE98266.1|
            predicted protein [Populus trichocarpa]
          Length = 1007

 Score =  281 bits (718), Expect = 3e-73
 Identities = 145/270 (53%), Positives = 191/270 (70%), Gaps = 1/270 (0%)
 Frame = +2

Query: 2    ENPRSLVIGPTEEWNLMANFENSSVAKNTSIHVYENGNVSVNVSAPGVDGSLYQNKDGNS 181
            ENPR+LVI P ++W   A+ E +S   N S  V+ENG  S +  A   +G    +K+ N 
Sbjct: 723  ENPRALVIRPMDQWPSRASAEKASPV-NASAPVHENGKNSESDFANLSNGYTAGDKNKNL 781

Query: 182  DQTSTSKDSAASAEHSHKPDGVHDDHLAPKGDSAIVDELTLK-ITYSFSSMGFSGGVDVM 358
             +    K+ A   + + KP+GVH+DH A K +S     +TL       +++ +  G D+ 
Sbjct: 782  AENGVIKEQAPHVKVNQKPNGVHEDHSAQKEESY----MTLSGHRAGEAAIVYEHGADIE 837

Query: 359  KLMPKIRHTDYYIEPRIEELAVKEISESGFCSNVKDFVVGWLGYGNIKFLGETDVRELDI 538
             LMPK+R +DY+ EPRI+ELA KE ++ GFC +VKDFVVG  GYG+IKF GETDVR LD+
Sbjct: 838  ALMPKLRRSDYFTEPRIQELAAKERAKPGFCRHVKDFVVGRHGYGSIKFSGETDVRRLDL 897

Query: 539  ESHVQFNDREVVVYMDETKKPLVGQGLNKPAEITLCNIKCIDKKTGKQYIDGPKVDMYKE 718
            ES VQFN+REV+VYMD++KKP VGQGLNKPAE+TL NIKC DKKTG+Q+ +GPK++ YKE
Sbjct: 898  ESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGRQFTEGPKIEKYKE 957

Query: 719  MLMKKTAEQGAEFVSYDPVQGDWKFKVQHF 808
            ML +K  +QGAEFVSYDPV+G+WKFKV HF
Sbjct: 958  MLKRKAEDQGAEFVSYDPVKGEWKFKVNHF 987


Top